Commits · c30f93374ea174f35d5bb3daefeb3fd5fc120821 · fmortreu / nextflow · GitLab

06 Dec, 2019 1 commit
- conda: add psmn links · c30f9337
  Laurent Modolo authored Dec 06, 2019
  
  c30f9337
22 Nov, 2019 1 commit
- psmn: test of new symlink structure for conda env · 3a681558
  Laurent Modolo authored Nov 22, 2019
  
  3a681558
18 Nov, 2019 5 commits
- add update_config.sh file to update to the last config version · d31c7df7
  Laurent Modolo authored Nov 18, 2019
  
  d31c7df7
- conda_packages.sh: fix CONDA_ENVS var · fb134b73
  Laurent Modolo authored Nov 18, 2019
  
  fb134b73
- conda_packages.sh: add CONDA_ENVS def · a42d5481
  Laurent Modolo authored Nov 18, 2019
  
  a42d5481
- .conda_packages.sh: fix conda init link · e409840a
  Laurent Modolo authored Nov 18, 2019
  
  e409840a
- conda: add start 2.7.3a · 4ef4b150
  Laurent Modolo authored Nov 18, 2019
  
  4ef4b150
13 Nov, 2019 1 commit
- nf_modules: rm ccin2p3_conda section in config files · cbe80128
  Laurent Modolo authored Nov 13, 2019
  
  cbe80128
06 Nov, 2019 14 commits
- nf_modules: bowtie fixe conda path · 9ec1ade8
  Laurent Modolo authored Nov 06, 2019
  
  9ec1ade8
- conda_psmn: fix path of the scripts in configs files · b43a5a48
  Laurent Modolo authored Nov 06, 2019
  
  b43a5a48
- conda_psmn.sh: hide file · 6f8ae0a0
  Laurent Modolo authored Nov 06, 2019
  
  6f8ae0a0
- training_dataset.config: fix psmn path · e55b6d4f
  Laurent Modolo authored Nov 06, 2019
  
  e55b6d4f
- training_dataset.config: update conda_psmn.sh path to use $workflow · d5e47faa
  Laurent Modolo authored Nov 06, 2019
  
  d5e47faa
- training_dataset.config: update conda path to use .conda_envs link · e18e8c9c
  Laurent Modolo authored Nov 06, 2019
  
  e18e8c9c
- psmn: add symlink to conda envs · 1b8d5db5
  Laurent Modolo authored Nov 06, 2019
  
  1b8d5db5
- training_dataset.config: update CONDA_ENVS · beac4302
  Laurent Modolo authored Nov 06, 2019
  
  beac4302
- training_dataset.config: update config to match latest changes · ffb23d50
  Laurent Modolo authored Nov 06, 2019
  
  ffb23d50
- hide src/* files not necessary for users · 3efd91bd
  Laurent Modolo authored Nov 06, 2019
  
  3efd91bd
- rename Kallisto_index.pbs to have more explicite name · 3d9436a7
  Laurent Modolo authored Nov 06, 2019
  
  3d9436a7
- PSMN: add install script for conda modules · 83c22dca
  Laurent Modolo authored Nov 06, 2019
  
  83c22dca
- nf: change psmn config to use conda · e58b21b6
  Laurent Modolo authored Nov 06, 2019
  
  e58b21b6
- Docker: update name of module to lbmc/module:version · 93255688
  Laurent Modolo authored Nov 06, 2019
  
  93255688
05 Nov, 2019 9 commits
- singularity: update configs to use docker hub and specified cacheDir · 0d93daf3
  Laurent Modolo authored Nov 05, 2019
  
  0d93daf3
- docker: change config file to use lbmc/ docker repository · 3ced2125
  Laurent Modolo authored Nov 05, 2019
  
  3ced2125
- docker: add script to update docker image to new tag with lbmc · d99fb753
  Laurent Modolo authored Nov 05, 2019
  
  d99fb753
- docker: add script to push every img on docker hub · 3c71aa66
  Laurent Modolo authored Nov 05, 2019
  
  3c71aa66
- README.md: add list of nextflow projects · c8fc7774
  Laurent Modolo authored Nov 05, 2019
  
  c8fc7774
- Merge branch 'master' of gitlab_lbmc:pipelines/nextflow · 14be919e
  Laurent Modolo authored Nov 05, 2019
  
  14be919e
- README.md: put list of available tools in another file · fe986dbe
  Laurent Modolo authored Nov 05, 2019
  
  fe986dbe
- Docker: umi_tools: fix dependecies list · 1edb0ebd
  Laurent Modolo authored Nov 05, 2019
  
  1edb0ebd
- README.md: mv getting started in a new file · 6fd6cf2f
  Laurent Modolo authored Nov 05, 2019
  
  6fd6cf2f
18 Oct, 2019 1 commit
- add mail for tp · a3fd2716
  Laurent Modolo authored Oct 18, 2019
  
  a3fd2716
18 Jul, 2019 1 commit
- fastqdump.nf: force tmp file to be in the right place · 01dac1f9
  Laurent Modolo authored Jul 18, 2019
  
  01dac1f9
12 Jun, 2019 1 commit
- test of static website · 59dbabfe
  Laurent Modolo authored Jun 12, 2019
  
  59dbabfe
11 Jun, 2019 2 commits
- fastp singularity: fix sps and pbs path · 155268f9
  Laurent Modolo authored Jun 11, 2019
  
  155268f9
- subread singularity: fix sps and pbs path · b3aee972
  Laurent Modolo authored Jun 11, 2019
  
  b3aee972
07 Jun, 2019 4 commits
- bowtie nf: change report max size from 15 line to 19 · 78cf7e3c
  Laurent Modolo authored Jun 07, 2019
  
  78cf7e3c
- htseq: fix singularity config · da3831bb
  Laurent Modolo authored Jun 07, 2019
  
  da3831bb
- subread nf: add nf config and test files · f92cde7c
  Laurent Modolo authored Jun 07, 2019
  
  f92cde7c
- bowtie: nf fix pair_id var call · 44e1391d
  Laurent Modolo authored Jun 07, 2019
  
  44e1391d