Commits · a480960829b92a9ce6612b33efc43fe37f1a0a85 · fmortreu / nextflow · GitLab

21 Aug, 2018 1 commit
- README.md: fix typo · a4809608
  Laurent Modolo authored Aug 21, 2018
  
  a4809608
02 Aug, 2018 9 commits
- cutadapt: nf file add file_id var for single-end like for paired · a6ae64ae
  Laurent Modolo authored Aug 02, 2018
  
  a6ae64ae
- Bowtie: nf add file_id var for single-end like for paired-end · f9a6c22f
  Laurent Modolo authored Aug 02, 2018
  
  f9a6c22f
- Kallisto: nf add file_id var for single-end like for paired-end · 2ce05607
  Laurent Modolo authored Aug 02, 2018
  
  2ce05607
- MultiQC: update test to match fastqc.nf · 1fbc5ef8
  Laurent Modolo authored Aug 02, 2018
  
  1fbc5ef8
- UrQt: nf add file_id var for single-end like for paired-end · c82cceba
  Laurent Modolo authored Aug 02, 2018
  
  c82cceba
- RSEM: nf add file_id var in single-end like for paired-end · 7ed402cc
  Laurent Modolo authored Aug 02, 2018
  
  7ed402cc
- FastQC: add id_file var for single-end like for paired-end · 9496c2db
  Laurent Modolo authored Aug 02, 2018
  
  9496c2db
- Bowtie2: modify single-end to have a file_id variable like for · 81a2d4bb
  Laurent Modolo authored Aug 02, 2018
```
paired-end
```
  81a2d4bb
- RSEM: change toList to collect · 52e09505
  Laurent Modolo authored Aug 02, 2018
  
  52e09505
31 Jul, 2018 6 commits
- Kallisto: change toList to collect · c7a2d66d
  Laurent Modolo authored Jul 31, 2018
  
  c7a2d66d
- Bowtie2: change toList to collect · 9af182a1
  Laurent Modolo authored Jul 31, 2018
  
  9af182a1
- Bowtie: change toList to collect · 3680aa85
  Laurent Modolo authored Jul 31, 2018
  
  3680aa85
- Bowtie: update Bowtie.nf to match test · 78bebd72
  Laurent Modolo authored Jul 31, 2018
  
  78bebd72
- README.md: update upstream url · e98e98b6
  Laurent Modolo authored Jul 31, 2018
  
  e98e98b6
- Bowtie: fix single mapping and index parsing · cc81bec2
  Laurent Modolo authored Jul 31, 2018
  
  cc81bec2
30 Jul, 2018 3 commits
- Bowti2: modify index handle to better deal with weird file names · ff9f90af
  Laurent Modolo authored Jul 30, 2018
  
  ff9f90af
- Bowtie2: add perl dependency and fix single-end example · af1d5130
  Laurent Modolo authored Jul 30, 2018
  
  af1d5130
- fix typo in nf files · 3d5118d9
  Laurent Modolo authored Jul 30, 2018
  
  3d5118d9
27 Jul, 2018 6 commits
- picard: add sge modules · 4f6d0692
  Laurent Modolo authored Jul 27, 2018
  
  4f6d0692
- README.md: add picard to tool table · 7795efad
  Laurent Modolo authored Jul 27, 2018
  
  7795efad
- Picard/2.18.11: add Dockerfiles · 2bf54bd2
  Laurent Modolo authored Jul 27, 2018
  
  2bf54bd2
- README.md: update tools table for MACS2 · 8b218461
  Laurent Modolo authored Jul 27, 2018
  
  8b218461
- update sge_modules · ee478e18
  Laurent Modolo authored Jul 27, 2018
  
  ee478e18
- MACS2: add docker files · c6846aa4
  Laurent Modolo authored Jul 27, 2018
  
  c6846aa4
26 Jul, 2018 9 commits
- README.md: add docker module for MUSIC · 24e11357
  Laurent Modolo authored Jul 26, 2018
  
  24e11357
- MUSIC: add docker files · 92d2d77e
  Laurent Modolo authored Jul 26, 2018
  
  92d2d77e
- README.md: order tools table · c6736fb1
  Laurent Modolo authored Jul 26, 2018
  
  c6736fb1
- README.md: add Bowtie to tools table · 236a74b2
  Laurent Modolo authored Jul 26, 2018
  
  236a74b2
- Bowtie2: fix bug on nf files · 654fe7ec
  Laurent Modolo authored Jul 26, 2018
  
  654fe7ec
- Bowtie: add nf files · 5c25d638
  Laurent Modolo authored Jul 26, 2018
  
  5c25d638
- Bowtie:1.2.2: add docker files · eb371480
  Laurent Modolo authored Jul 26, 2018
  
  eb371480
- bowtie2.nf: improve root finding of index file name as asked by @elabaron · d0d8b68b
  Laurent Modolo authored Jul 26, 2018
  
  d0d8b68b
- README.md: fix table for HISAT2 · 4ca980bb
  Laurent Modolo authored Jul 26, 2018
  
  4ca980bb
25 Jul, 2018 6 commits
- Cleanup SRAtoolkit files · b74bc642
  Laurent Modolo authored Jul 25, 2018
  
  b74bc642
- README.md: add MultiQC and FastQC to the tools table for nf · a2cdaddc
  Laurent Modolo authored Jul 25, 2018
  
  a2cdaddc
- MultiQC: add nf, test, and fix Dockerfile · a366ef20
  Laurent Modolo authored Jul 25, 2018
  
  a366ef20
- Fastqc.nf: add tests · 47f170cd
  Laurent Modolo authored Jul 25, 2018
  
  47f170cd
- FastQC.nf: add paired process · 6ccc5fa2
  Laurent Modolo authored Jul 25, 2018
  
  6ccc5fa2
- FastQC/Dockerfile: add perl version · e8f0f815
  Laurent Modolo authored Jul 25, 2018
  
  e8f0f815