Unverified Commit 30b52060 authored by Laurent Modolo's avatar Laurent Modolo
Browse files

*.config: fix singularity cacheDir path for in2p3

parent 75b8a82d
......@@ -35,7 +35,7 @@ profiles {
}
ccin2p3 {
singularity.enabled = true
singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
singularity.cacheDir = "$baseDir/.singularity_in2p3/"
singularity.runOptions = "--bind /pbs,/sps,/scratch"
process{
withName: fasta_from_bed {
......
......@@ -36,7 +36,7 @@ profiles {
}
ccin2p3 {
singularity.enabled = true
singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
singularity.cacheDir = "$baseDir/.singularity_in2p3/"
singularity.runOptions = "--bind /pbs,/sps,/scratch"
process{
withName: index_fasta {
......
......@@ -36,7 +36,7 @@ profiles {
}
ccin2p3 {
singularity.enabled = true
singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
singularity.cacheDir = "$baseDir/.singularity_in2p3/"
singularity.runOptions = "--bind /pbs,/sps,/scratch"
process{
withName: mapping_fastq {
......
......@@ -36,7 +36,7 @@ profiles {
}
ccin2p3 {
singularity.enabled = true
singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
singularity.cacheDir = "$baseDir/.singularity_in2p3/"
singularity.runOptions = "--bind /pbs,/sps,/scratch"
process{
withName: mapping_fastq {
......
......@@ -36,7 +36,7 @@ profiles {
}
ccin2p3 {
singularity.enabled = true
singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
singularity.cacheDir = "$baseDir/.singularity_in2p3/"
singularity.runOptions = "--bind /pbs,/sps,/scratch"
process{
withName: index_fasta {
......
......@@ -36,7 +36,7 @@ profiles {
}
ccin2p3 {
singularity.enabled = true
singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
singularity.cacheDir = "$baseDir/.singularity_in2p3/"
singularity.runOptions = "--bind /pbs,/sps,/scratch"
process{
withName: mapping_fastq {
......
......@@ -36,7 +36,7 @@ profiles {
}
ccin2p3 {
singularity.enabled = true
singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
singularity.cacheDir = "$baseDir/.singularity_in2p3/"
singularity.runOptions = "--bind /pbs,/sps,/scratch"
process{
withName: mapping_fastq {
......
......@@ -36,7 +36,7 @@ profiles {
}
ccin2p3 {
singularity.enabled = true
singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
singularity.cacheDir = "$baseDir/.singularity_in2p3/"
singularity.runOptions = "--bind /pbs,/sps,/scratch"
process{
withName: index_fasta {
......
......@@ -36,7 +36,7 @@ profiles {
}
ccin2p3 {
singularity.enabled = true
singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
singularity.cacheDir = "$baseDir/.singularity_in2p3/"
singularity.runOptions = "--bind /pbs,/sps,/scratch"
process{
withName: mapping_fastq {
......
......@@ -35,7 +35,7 @@ profiles {
}
ccin2p3 {
singularity.enabled = true
singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
singularity.cacheDir = "$baseDir/.singularity_in2p3/"
singularity.runOptions = "--bind /pbs,/sps,/scratch"
process{
withName: adaptor_removal {
......
......@@ -35,7 +35,7 @@ profiles {
}
ccin2p3 {
singularity.enabled = true
singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
singularity.cacheDir = "$baseDir/.singularity_in2p3/"
singularity.runOptions = "--bind /pbs,/sps,/scratch"
process{
withName: adaptor_removal {
......
......@@ -35,7 +35,7 @@ profiles {
}
ccin2p3 {
singularity.enabled = true
singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
singularity.cacheDir = "$baseDir/.singularity_in2p3/"
singularity.runOptions = "--bind /pbs,/sps,/scratch"
process{
withName: trimming {
......
......@@ -35,7 +35,7 @@ profiles {
}
ccin2p3 {
singularity.enabled = true
singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
singularity.cacheDir = "$baseDir/.singularity_in2p3/"
singularity.runOptions = "--bind /pbs,/sps,/scratch"
process{
withName: trimming {
......
......@@ -55,7 +55,7 @@ profiles {
}
ccin2p3 {
singularity.enabled = true
singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
singularity.cacheDir = "$baseDir/.singularity_in2p3/"
singularity.runOptions = "--bind /pbs,/sps,/scratch"
process{
withName: index_bam {
......
......@@ -36,7 +36,7 @@ profiles {
}
ccin2p3 {
singularity.enabled = true
singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
singularity.cacheDir = "$baseDir/.singularity_in2p3/"
singularity.runOptions = "--bind /pbs,/sps,/scratch"
process{
withName: compute_matrix {
......
......@@ -36,7 +36,7 @@ profiles {
}
ccin2p3 {
singularity.enabled = true
singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
singularity.cacheDir = "$baseDir/.singularity_in2p3/"
singularity.runOptions = "--bind /pbs,/sps,/scratch"
process{
withName: plot_profile {
......
......@@ -35,7 +35,7 @@ profiles {
}
ccin2p3 {
singularity.enabled = true
singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
singularity.cacheDir = "$baseDir/.singularity_in2p3/"
singularity.runOptions = "--bind /pbs,/sps,/scratch"
process{
withName: fastp_fastq {
......
......@@ -35,7 +35,7 @@ profiles {
}
ccin2p3 {
singularity.enabled = true
singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
singularity.cacheDir = "$baseDir/.singularity_in2p3/"
singularity.runOptions = "--bind /pbs,/sps,/scratch"
process{
withName: fastp_fastq {
......
......@@ -35,7 +35,7 @@ profiles {
}
ccin2p3 {
singularity.enabled = true
singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
singularity.cacheDir = "$baseDir/.singularity_in2p3/"
singularity.runOptions = "--bind /pbs,/sps,/scratch"
process{
withName: fastqc_fastq {
......
......@@ -35,7 +35,7 @@ profiles {
}
ccin2p3 {
singularity.enabled = true
singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
singularity.cacheDir = "$baseDir/.singularity_in2p3/"
singularity.runOptions = "--bind /pbs,/sps,/scratch"
process{
withName: fastqc_fastq {
......
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