Commit 00e497f8 authored by fduveau's avatar fduveau
Browse files

Update src/RNASeq.nf

parent 48d7e8b0
......@@ -23,12 +23,12 @@ process adaptor_removal {
"""
}
process trimming {
rocess trimming {
tag "${reads}"
publishDir "results/fastq/trimming/", mode: 'copy'
input:
set pair_id, "*_cut_R{1,2}.fastq.gz" into fastq_files_cut
set pair_id, file(reads) from fastq_files_cut
output:
set pair_id, "*_trim_R{1,2}.fastq.gz" into fastq_files_trim
......@@ -41,3 +41,4 @@ UrQt --t 20 --m ${task.cpus} --gz \
> ${pair_id}_trimming_report.txt
"""
}
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