GitLab

This repository is a template containing scripts to help you build your own nextflow pipeline.

This repository allow to reproduce the analysis and create figures as in the current publication.

Create venn diagram from 2 bed files

Source code of the algorithm CARDAMOM developed for inferring GRN from timestamped scRNA-seq data

Pipeline for phylogenetic analysis of legionella genes.

Analysis of the composition biais within the exons

Pipeline used to run deltaTE analysis

RNAseq analysis for Andréa Cimarelli, 2020-2021. ISG20

François Gindraud, a postdoc in the SBDM Team, who has a loot of experience in software development, will be with us for a few months. François, will be able to give a series of small tutorials session on how to write better code.

material for the R the basis formation

repo with analyses for the LBMC review article on RAPToR

Source code for generating the main figures of the article "Reduction of a sothcastic model of gene expression: Lagrangian dynamics gives acces to basins of attraction as cell types and metastability".

pipeline mapping reads on great apes genomes and variant calling

Scripts exploring Chimp and Gorilla data with different packages for population genetics (pegas, adegenet, popGenome, etc.)

comparisons between datasets