GitLab

Analysis scripts for the RAPToR paper

Script to detect recombination tracts on the output of an analysis of the SNPs from a donor strain on a transformed bacteria. Project from Léo Hardy and Xavier Charpentier

This repository is a template containing scripts to help you build your own nextflow pipeline.

Create a Nextflow pipeline for juicer module

This repository is a template containing scripts to help you build your own nextflow pipeline.

This repository is a template containing scripts to help you build your own nextflow pipeline.

Mapping and variant calling of reads on great ape reference genomes. From Julie Plantade.

This repository is a template containing scripts to help you build your own nextflow pipeline.

Functional analysis of RNAseq differential expression analysis, on competence mutants. Use of COG annotation for enrichment analysis in Legionella pneumophila.

Analysis of a screen for positive selection in the genes of the SARS-CoV-2 interactome.

This project allows to display the size distribution of genomic intervals inside every bed files located in a given directory

This repository is a template containing scripts to help you build your own nextflow pipeline.

This repository allow to reproduce the analysis and create figures as in the current publication.

Create venn diagram from 2 bed files

Source code of the algorithm CARDAMOM developed for inferring GRN from timestamped scRNA-seq data

Pipeline for phylogenetic analysis of legionella genes.

Analysis of the composition biais within the exons