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documents pour la formation à l'analyse de données RNAseq

Mapping and variant calling of reads on great ape reference genomes. From Julie Plantade.

Gene expression in cells expressing the anti-viral protein ISG20 or not. RNAseq analysis and graphic representations.

Script to detect recombination tracts on the output of an analysis of the SNPs from a donor strain on a transformed bacteria. Project from Léo Hardy and Xavier Charpentier

This repository is a template containing scripts to help you build your own nextflow pipeline.

This repository is a template containing scripts to help you build your own nextflow pipeline.

This repository allow to reproduce the analysis and create figures as in the current publication.

Pipeline for phylogenetic analysis of legionella genes.

Coevolution analysis: Retrieval of orthologs of ComR and RocC in Legionella, alignment and phylogeny.

Pipeline dedicated to ChIPseq.

This repository is a template containing scripts to help you build your own nextflow pipeline.

This repository is a template containing scripts to help you build your own nextflow pipeline.

script allowing the visualization of the coverage in bigwig files

This repository is a template containing scripts to help you build your own nextflow pipeline.

Copie du pipeline de Maxime Lepetit, pour y adapter mon workflow