From 97572e5c6693cda5d20cde6f49a304f5e76b502f Mon Sep 17 00:00:00 2001 From: Laurent Modolo <laurent.modolo@ens-lyon.fr> Date: Tue, 17 Jul 2018 15:24:49 +0200 Subject: [PATCH] r_dev/Dockerfile: container for R developpment --- r_dev/Dockerfile | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) create mode 100644 r_dev/Dockerfile diff --git a/r_dev/Dockerfile b/r_dev/Dockerfile new file mode 100644 index 0000000..4113006 --- /dev/null +++ b/r_dev/Dockerfile @@ -0,0 +1,23 @@ +FROM r-base:3.5.1 +MAINTAINER Laurent Modolo + +ENV PACKAGES libcurl4-openssl-dev \ + libssh2-1-dev \ + libssl-dev \ + libxml2-dev \ + zlib1g-dev \ + curl \ + git + +RUN apt-get update && \ + apt-get install -y --no-install-recommends ${PACKAGES} && \ + apt-get clean + +RUN R -e 'source("https://bioconductor.org/biocLite.R"); \ + biocLite(c("devtools", "ggplot2", "Biobase", "curl", "crayon", "testthat", \ + "BiocInstaller", "Rcpp", "MASS", "rmarkdown", "knitr", "hunspell", "lintr", \ + "bitops", "roxygen2", "evaluate", "rversions", "covr", "gmailr"))' + +RUN R -e 'source("https://bioconductor.org/biocLite.R"); \ + biocLite(c("flowCore", "flowClust", "openCyto", "ggcyto", "flowWorkspace", \ + "scales"))' -- GitLab