From 91f4827bdf96ad2dc9eb9cbedb37a0df58b997c0 Mon Sep 17 00:00:00 2001 From: Sergio Sarnataro <sergio.sarnataro@ens-lyon.fr> Date: Tue, 14 Mar 2023 09:39:52 +0100 Subject: [PATCH] Upload New File --- scanpy_environment.yml | 308 +++++++++++++++++++++++++++++++++++++++++ 1 file changed, 308 insertions(+) create mode 100644 scanpy_environment.yml diff --git a/scanpy_environment.yml b/scanpy_environment.yml new file mode 100644 index 0000000..2f977f6 --- /dev/null +++ b/scanpy_environment.yml @@ -0,0 +1,308 @@ +name: python3.7 +channels: + - conda-forge + - defaults +dependencies: + - _libgcc_mutex=0.1=main + - _openmp_mutex=5.1=1_gnu + - _tflow_select=2.3.0=mkl + - abseil-cpp=20211102.0=hd4dd3e8_0 + - absl-py=1.3.0=py37h06a4308_0 + - aiohttp=3.8.3=py37h5eee18b_0 + - aiosignal=1.2.0=pyhd3eb1b0_0 + - anyio=3.5.0=py37h06a4308_0 + - argon2-cffi=21.3.0=pyhd3eb1b0_0 + - argon2-cffi-bindings=21.2.0=py37h7f8727e_0 + - arpack=3.7.0=hdefa2d7_2 + - astunparse=1.6.3=py_0 + - async-timeout=4.0.2=py37h06a4308_0 + - asynctest=0.13.0=py_0 + - attrs=22.1.0=py37h06a4308_0 + - babel=2.11.0=py37h06a4308_0 + - backcall=0.2.0=pyhd3eb1b0_0 + - beautifulsoup4=4.11.1=py37h06a4308_0 + - blas=1.0=mkl + - bleach=4.1.0=pyhd3eb1b0_0 + - blinker=1.4=py37h06a4308_0 + - bottleneck=1.3.5=py37h7deecbd_0 + - brotli=1.0.9=h5eee18b_7 + - brotli-bin=1.0.9=h5eee18b_7 + - brotlipy=0.7.0=py37h27cfd23_1003 + - c-ares=1.18.1=h7f8727e_0 + - ca-certificates=2022.12.7=ha878542_0 + - cachetools=4.2.2=pyhd3eb1b0_0 + - certifi=2022.12.7=pyhd8ed1ab_0 + - cffi=1.15.1=py37h5eee18b_3 + - charset-normalizer=2.0.4=pyhd3eb1b0_0 + - click=8.0.4=py37h06a4308_0 + - cryptography=38.0.4=py37h9ce1e76_0 + - cycler=0.11.0=pyhd3eb1b0_0 + - dbus=1.13.18=hb2f20db_0 + - debugpy=1.5.1=py37h295c915_0 + - defusedxml=0.7.1=pyhd3eb1b0_0 + - entrypoints=0.4=py37h06a4308_0 + - expat=2.4.9=h6a678d5_0 + - fftw=3.3.9=h27cfd23_1 + - flatbuffers=2.0.0=h2531618_0 + - flit-core=3.6.0=pyhd3eb1b0_0 + - fontconfig=2.14.1=h52c9d5c_1 + - fonttools=4.25.0=pyhd3eb1b0_0 + - freetype=2.12.1=h4a9f257_0 + - frozenlist=1.3.3=py37h5eee18b_0 + - gast=0.4.0=pyhd3eb1b0_0 + - giflib=5.2.1=h7b6447c_0 + - glib=2.69.1=he621ea3_2 + - glpk=4.65=h9202a9a_1004 + - gmp=6.2.1=h58526e2_0 + - google-auth=2.6.0=pyhd3eb1b0_0 + - google-auth-oauthlib=0.4.4=pyhd3eb1b0_0 + - google-pasta=0.2.0=pyhd3eb1b0_0 + - grpc-cpp=1.46.1=h33aed49_0 + - grpcio=1.42.0=py37hce63b2e_0 + - gst-plugins-base=1.14.0=h8213a91_2 + - gstreamer=1.14.0=h28cd5cc_2 + - h5py=3.7.0=py37h737f45e_0 + - hdf5=1.10.6=h3ffc7dd_1 + - icu=58.2=he6710b0_3 + - idna=3.4=py37h06a4308_0 + - igraph=0.9.8=hf5496dd_0 + - importlib-metadata=4.11.3=py37h06a4308_0 + - importlib_metadata=4.11.3=hd3eb1b0_0 + - importlib_resources=5.2.0=pyhd3eb1b0_1 + - intel-openmp=2021.4.0=h06a4308_3561 + - ipykernel=6.15.2=py37h06a4308_0 + - ipython=7.31.1=py37h06a4308_1 + - ipython_genutils=0.2.0=pyhd3eb1b0_1 + - ipywidgets=7.6.5=pyhd3eb1b0_1 + - jedi=0.18.1=py37h06a4308_1 + - jinja2=3.1.2=py37h06a4308_0 + - joblib=1.1.1=py37h06a4308_0 + - jpeg=9e=h7f8727e_0 + - json5=0.9.6=pyhd3eb1b0_0 + - jsonschema=4.16.0=py37h06a4308_0 + - jupyter=1.0.0=py37h06a4308_8 + - jupyter_client=7.4.8=py37h06a4308_0 + - jupyter_console=6.4.4=py37h06a4308_0 + - jupyter_core=4.11.1=py37h06a4308_0 + - jupyter_server=1.23.4=py37h06a4308_0 + - jupyterlab=3.5.2=py37h06a4308_0 + - jupyterlab_pygments=0.1.2=py_0 + - jupyterlab_server=2.16.5=py37h06a4308_0 + - jupyterlab_widgets=1.0.0=pyhd3eb1b0_1 + - keras=2.10.0=py37h06a4308_0 + - keras-preprocessing=1.1.2=pyhd3eb1b0_0 + - kiwisolver=1.4.4=py37h6a678d5_0 + - krb5=1.19.4=h568e23c_0 + - lcms2=2.12=h3be6417_0 + - ld_impl_linux-64=2.38=h1181459_1 + - leidenalg=0.8.10=py37hd23a5d3_0 + - lerc=3.0=h295c915_0 + - libblas=3.9.0=12_linux64_mkl + - libbrotlicommon=1.0.9=h5eee18b_7 + - libbrotlidec=1.0.9=h5eee18b_7 + - libbrotlienc=1.0.9=h5eee18b_7 + - libcblas=3.9.0=12_linux64_mkl + - libclang=10.0.1=default_hb85057a_2 + - libcurl=7.87.0=h91b91d3_0 + - libdeflate=1.8=h7f8727e_5 + - libedit=3.1.20221030=h5eee18b_0 + - libev=4.33=h7f8727e_1 + - libevent=2.1.12=h8f2d780_0 + - libffi=3.4.2=h6a678d5_6 + - libgcc-ng=11.2.0=h1234567_1 + - libgfortran-ng=11.2.0=h00389a5_1 + - libgfortran5=11.2.0=h1234567_1 + - libgomp=11.2.0=h1234567_1 + - liblapack=3.9.0=12_linux64_mkl + - libllvm10=10.0.1=hbcb73fb_5 + - libnghttp2=1.46.0=hce63b2e_0 + - libpng=1.6.37=hbc83047_0 + - libpq=12.9=h16c4e8d_3 + - libprotobuf=3.20.1=h4ff587b_0 + - libsodium=1.0.18=h7b6447c_0 + - libssh2=1.10.0=h8f2d780_0 + - libstdcxx-ng=11.2.0=h1234567_1 + - libtiff=4.5.0=hecacb30_0 + - libuuid=1.41.5=h5eee18b_0 + - libwebp=1.2.4=h11a3e52_0 + - libwebp-base=1.2.4=h5eee18b_0 + - libxcb=1.15=h7f8727e_0 + - libxkbcommon=1.0.1=hfa300c1_0 + - libxml2=2.9.14=h74e7548_0 + - libxslt=1.1.35=h4e12654_0 + - lxml=4.9.1=py37h1edc446_0 + - lz4-c=1.9.4=h6a678d5_0 + - markdown=3.4.1=py37h06a4308_0 + - markupsafe=2.1.1=py37h7f8727e_0 + - matplotlib=3.5.2=py37h06a4308_0 + - matplotlib-base=3.5.2=py37hf590b9c_0 + - matplotlib-inline=0.1.6=py37h06a4308_0 + - metis=5.1.0=h58526e2_1006 + - mkl=2021.4.0=h06a4308_640 + - mkl-service=2.4.0=py37h7f8727e_0 + - mkl_fft=1.3.1=py37hd3c417c_0 + - mkl_random=1.2.2=py37h51133e4_0 + - mpfr=4.1.0=h9202a9a_1 + - multidict=6.0.2=py37h5eee18b_0 + - munkres=1.1.4=py_0 + - nbclassic=0.4.8=py37h06a4308_0 + - nbclient=0.5.13=py37h06a4308_0 + - nbformat=5.7.0=py37h06a4308_0 + - ncurses=6.3=h5eee18b_3 + - nest-asyncio=1.5.6=py37h06a4308_0 + - notebook=6.5.2=py37h06a4308_0 + - notebook-shim=0.2.2=py37h06a4308_0 + - nspr=4.33=h295c915_0 + - nss=3.74=h0370c37_0 + - numexpr=2.8.4=py37he184ba9_0 + - numpy=1.21.5=py37h6c91a56_3 + - numpy-base=1.21.5=py37ha15fc14_3 + - oauthlib=3.2.1=py37h06a4308_0 + - openssl=1.1.1t=h7f8727e_0 + - opt_einsum=3.3.0=pyhd3eb1b0_1 + - packaging=22.0=py37h06a4308_0 + - pandas=1.3.5=py37h8c16a72_0 + - pandocfilters=1.5.0=pyhd3eb1b0_0 + - parso=0.8.3=pyhd3eb1b0_0 + - pcre=8.45=h295c915_0 + - pexpect=4.8.0=pyhd3eb1b0_3 + - pickleshare=0.7.5=pyhd3eb1b0_1003 + - pillow=9.3.0=py37hace64e9_1 + - pip=22.3.1=py37h06a4308_0 + - pkgutil-resolve-name=1.3.10=py37h06a4308_0 + - ply=3.11=py37_0 + - prometheus_client=0.14.1=py37h06a4308_0 + - prompt-toolkit=3.0.36=py37h06a4308_0 + - prompt_toolkit=3.0.36=hd3eb1b0_0 + - protobuf=3.20.1=py37h295c915_0 + - psutil=5.9.0=py37h5eee18b_0 + - ptyprocess=0.7.0=pyhd3eb1b0_2 + - pyasn1=0.4.8=pyhd3eb1b0_0 + - pyasn1-modules=0.2.8=py_0 + - pycparser=2.21=pyhd3eb1b0_0 + - pygments=2.11.2=pyhd3eb1b0_0 + - pyjwt=2.4.0=py37h06a4308_0 + - pyopenssl=22.0.0=pyhd3eb1b0_0 + - pyparsing=3.0.9=py37h06a4308_0 + - pyqt=5.15.7=py37h6a678d5_1 + - pyqt5-sip=12.11.0=py37h6a678d5_1 + - pyrsistent=0.18.0=py37heee7806_0 + - pysocks=1.7.1=py37_1 + - python=3.7.15=h7a1cb2a_1 + - python-dateutil=2.8.2=pyhd3eb1b0_0 + - python-fastjsonschema=2.16.2=py37h06a4308_0 + - python-flatbuffers=2.0=pyhd3eb1b0_0 + - python-igraph=0.9.10=py37h48d2a39_0 + - python_abi=3.7=2_cp37m + - pytz=2022.7=py37h06a4308_0 + - pyzmq=23.2.0=py37h6a678d5_0 + - qt-main=5.15.2=h327a75a_7 + - qt-webengine=5.15.9=hd2b0992_4 + - qtconsole=5.4.0=py37h06a4308_0 + - qtpy=2.2.0=py37h06a4308_0 + - qtwebkit=5.212=h4eab89a_4 + - re2=2022.04.01=h295c915_0 + - readline=8.2=h5eee18b_0 + - requests=2.28.1=py37h06a4308_0 + - requests-oauthlib=1.3.0=py_0 + - rsa=4.7.2=pyhd3eb1b0_1 + - scikit-learn=1.0.2=py37h51133e4_1 + - scipy=1.7.3=py37h6c91a56_2 + - seaborn=0.12.2=py37h06a4308_0 + - send2trash=1.8.0=pyhd3eb1b0_1 + - setuptools=65.6.3=py37h06a4308_0 + - sip=6.6.2=py37h6a678d5_0 + - six=1.16.0=pyhd3eb1b0_1 + - snappy=1.1.9=h295c915_0 + - sniffio=1.2.0=py37h06a4308_1 + - soupsieve=2.3.2.post1=py37h06a4308_0 + - sqlite=3.40.1=h5082296_0 + - suitesparse=5.10.1=h9e50725_1 + - tbb=2021.5.0=h924138e_1 + - tensorboard=2.10.0=py37h06a4308_0 + - tensorboard-data-server=0.6.1=py37h52d8a92_0 + - tensorboard-plugin-wit=1.8.1=py37h06a4308_0 + - tensorflow=2.10.0=mkl_py37h5d113c5_0 + - tensorflow-base=2.10.0=mkl_py37hb9daa73_0 + - tensorflow-estimator=2.10.0=py37h06a4308_0 + - termcolor=2.1.0=py37h06a4308_0 + - terminado=0.17.1=py37h06a4308_0 + - texttable=1.6.7=pyhd8ed1ab_0 + - threadpoolctl=2.2.0=pyh0d69192_0 + - tinycss2=1.2.1=py37h06a4308_0 + - tk=8.6.12=h1ccaba5_0 + - toml=0.10.2=pyhd3eb1b0_0 + - tomli=2.0.1=py37h06a4308_0 + - tornado=6.2=py37h5eee18b_0 + - traitlets=5.7.1=py37h06a4308_0 + - typing-extensions=4.4.0=py37h06a4308_0 + - typing_extensions=4.4.0=py37h06a4308_0 + - urllib3=1.26.14=py37h06a4308_0 + - wcwidth=0.2.5=pyhd3eb1b0_0 + - webencodings=0.5.1=py37_1 + - websocket-client=0.58.0=py37h06a4308_4 + - werkzeug=2.2.2=py37h06a4308_0 + - wheel=0.37.1=pyhd3eb1b0_0 + - widgetsnbextension=3.5.2=py37h06a4308_0 + - wrapt=1.14.1=py37h5eee18b_0 + - xz=5.2.8=h5eee18b_0 + - yarl=1.8.1=py37h5eee18b_0 + - zeromq=4.3.4=h2531618_0 + - zipp=3.11.0=py37h06a4308_0 + - zlib=1.2.13=h5eee18b_0 + - zstd=1.5.2=ha4553b6_0 + - pip: + - anndata==0.8.0 + - annoy==1.17.1 + - bbknn==1.5.1 + - boto3==1.26.70 + - botocore==1.29.70 + - cython==0.29.33 + - dataclasses==0.6 + - decorator==4.4.2 + - diskcache==5.4.0 + - fa2==0.3.5 + - fbpca==1.0 + - forceatlas2==1.0 + - geosketch==1.2 + - imageio==2.25.1 + - intervaltree==3.1.0 + - jmespath==1.0.1 + - llvmlite==0.39.1 + - mistune==2.0.5 + - mpmath==1.2.1 + - natsort==8.2.0 + - nbconvert==7.2.9 + - networkx==2.6.3 + - numba==0.56.4 + - nvidia-cublas-cu11==11.10.3.66 + - nvidia-cuda-nvrtc-cu11==11.7.99 + - nvidia-cuda-runtime-cu11==11.7.99 + - nvidia-cudnn-cu11==8.5.0.96 + - patsy==0.5.3 + - pynndescent==0.5.8 + - pywavelets==1.3.0 + - pyyaml==6.0 + - read-roi==1.6.0 + - regional==1.1.2 + - s3transfer==0.6.0 + - scanorama==1.7.3 + - scanpy==1.9.1 + - scikit-image==0.16.2 + - semantic-version==2.10.0 + - session-info==1.0.0 + - showit==1.1.4 + - slicedimage==4.1.1 + - sortedcontainers==2.4.0 + - starfish==0.2.2 + - statsmodels==0.13.5 + - stdlib-list==0.8.0 + - sympy==1.5.1 + - tifffile==2021.11.2 + - torch==1.13.1 + - tqdm==4.64.1 + - trackpy==0.5.0 + - umap-learn==0.5.3 + - validators==0.20.0 + - xarray==0.20.2 +prefix: /home/ssarnataro/miniconda3/envs/python3.7 -- GitLab