Verified Commit e25a64b9 authored by Laurent Modolo's avatar Laurent Modolo
Browse files

nextflow.pbs: fix pbs example

parent 0bb0525d
......@@ -25,11 +25,11 @@ PIPELINE=<pipeline_name>
NF_VERSION=19.04
NF=/pbs/throng/lbmc/cl7/nextflow/${NF_VERSION}/nextflow
PIPELINE=${SCRATCH}/${PROJECT}/src/${PIPELINE}.nf
NEXTFLOW=/pbs/throng/lbmc/cl7/nextflow/${NF_VERSION}/nextflow
NF=${SCRATCH}/${PROJECT}/src/${PIPELINE}.nf
CONFIG=${SCRATCH}/${PROJECT}/src/${PIPELINE}.config
${NF} ${PIPELINE} -c ${CONFIG} -profile ccin2p3 \
${NEXTFLOW} ${NF} -c ${CONFIG} -profile ccin2p3 \
--fasta "${SCRATCH}/<project>/data/fasta" \
-w "${SCRATCH}/${PROJECT}/work/" \
-with-report "${SCRATCH}/${PROJECT}/results/${PIPELINE}_report.html" \
......
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