Verified Commit 92e0e00a authored by Laurent Modolo's avatar Laurent Modolo
Browse files

fix emit: for named workflow

parent e363dd6f
......@@ -10,8 +10,8 @@ workflow mapping {
index_fasta(fasta)
mapping_fastq(index_fasta.out.index.collect(), fastq)
emit:
bam: mapping_fastq.out.bam
report: mapping_fastq.out.report
bam = mapping_fastq.out.bam
report = mapping_fastq.out.report
}
......
......@@ -39,7 +39,7 @@ workflow germline_cohort_data_variant_calling {
fasta_idx
)
emit:
vcf: call_variants_all_sample.out.vcf
vcf = call_variants_all_sample.out.vcf
}
/*******************************************************************/
......@@ -62,7 +62,7 @@ workflow base_quality_recalibrator{
compute_base_recalibration.out.table
)
emit:
bam: apply_base_recalibration.out.bam
bam = apply_base_recalibration.out.bam
}
process index_vcf {
......@@ -195,7 +195,7 @@ workflow call_variants_all_sample {
fasta_idx
)
emit:
vcf: genomic_db_call.out.vcf
vcf = genomic_db_call.out.vcf
}
process consolidate_gvcf {
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment