Verified Commit 9293f190 authored by Laurent Modolo's avatar Laurent Modolo
Browse files

emaze: change input to follow change to t2g in kb main.nf

parent 3de4d8de
......@@ -12,13 +12,10 @@ workflow count {
take:
bam_idx
fasta
transcript_to_gene
gtf
main:
transcript_to_gene
.ifEmpty(["NO T2G", ""])
.set{ transcript_to_gene_optional }
tr2g(gtf, transcript_to_gene_optional)
tr2g(gtf)
fasta_to_transcripts_lengths(fasta)
bam2ec(bam_idx, fasta_to_transcripts_lengths.out.tsv.collect())
emase(bam2ec.out.bin, bam2ec.out.tsv, tr2g.out.t2g)
......
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