Verified Commit 179127d0 authored by Laurent Modolo's avatar Laurent Modolo
Browse files

gatk4: fix include path

parent 78ed7b01
......@@ -3,12 +3,12 @@ container_url = "broadinstitute/gatk:${version}"
include {
index_fasta as samtools_index_fasta;
} from './../nf_modules/samtools/main.nf'
} from './../samtools/main.nf'
include {
index_fasta as picard_index_fasta;
index_bam as picard_index_bam;
mark_duplicate;
} from './../nf_modules/picard/main.nf'
} from './../picard/main.nf'
params.variant_calling_out = ""
workflow germline_cohort_data_variant_calling {
......
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