From d334bdbe03eb45ded2f8b4554ee03cb213f5ff55 Mon Sep 17 00:00:00 2001 From: Laurent Modolo <laurent.modolo@ens-lyon.fr> Date: Mon, 19 Apr 2021 17:17:16 +0200 Subject: [PATCH] fix typo in 11. --- 11_install_system_programs.md | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/11_install_system_programs.md b/11_install_system_programs.md index 5b4924f..06d9ead 100644 --- a/11_install_system_programs.md +++ b/11_install_system_programs.md @@ -15,7 +15,7 @@ However, interdependencies between programs and libraries can be a nightmare to System-wide installation steps: - The user asks the package manager to install a program -- The** package manager** queries its repository lists to search for the most recent **package** version of the program (or a specific version) +- The **package manager** queries its repository lists to search for the most recent **package** version of the program (or a specific version) - The **package manager** construct the dependency tree of the program - The **package manager** check that the new dependency tree is compatible with every other installed program - The **package manager** install the program **package** and all it’s dependencies **packages** in their correct version @@ -64,7 +64,7 @@ You can check the list of repositories that `apt` checks in the file `/etc/apt/s You can add the official cran repository to your repositories list: ```sh -sudo add-apt-repository 'deb https://cloud.r-project.org/bin/linux/ubuntu <release_name>-cran35/' +sudo add-apt-repository 'deb https://cloud.r-project.org/bin/linux/ubuntu <release_name>-cran40/' ``` You can use the command `lsb_release -sc` to get your **release name**. @@ -115,7 +115,7 @@ sudo apt search linux-image If it’s not a good idea to have different **package manager** on the same system (they don’t know how the dependencies are handled by the other’s manager). You will also encounter language specific package manager: -- `ppm` for Pperl +- `ppm` for Perl - `pip` for Python - `npm` for JavaScript - `cargo` for Rust @@ -219,7 +219,7 @@ You can finalize the installation with the command `make install`. Usually the c Read the `README` file of the [fastp](https://github.com/OpenGene/fastp) program to see which methods of installation are available. -Installing programs and maintain different versions of a program on the same system, is a difficult task. In the next session, we will learn how to use [virtualisation](http://perso.ens-lyon.fr/laurent.modolo/unix/12_virtualisation.html) to facilitate our job. +Installing programs and maintain different versions of a program on the same system, is a difficult task. In the next session, we will learn how to use [virtualization](http://perso.ens-lyon.fr/laurent.modolo/unix/12_virtualization.html) to facilitate our job. > We have used the following commands: > -- GitLab