diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 12c1b7d4168a2fde4fba25ee89ba113374c07e2e..4b1148482221f6167115f514e65acf42eb63728f 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -1,6 +1,5 @@ # Objectifs -- Planifier des sessions d'1h30 -- Apprendre à programmer en même temps que l'apprentissage du langage R -- Bien définir le résultat biologique que l'on veut obtenir à la fin de la séance -- Commencer à réfléchir de manière fonctionnelle et linéaire à partir de la 3e séance +- Write the session_1/bioconductor.Rmd training (and add link in session_1.Rmd) +- Write the session_1/github.Rmd training (and add link in session_1.Rmd) +- Write the WDI.Rmd training which will be for a later session \ No newline at end of file diff --git a/WDI.Rmd b/WDI.Rmd index cf655203cfb5e8c45379055adb318046b29b632b..2cd9e27d8dc6939c987be4b5b228876be6b19652 100644 --- a/WDI.Rmd +++ b/WDI.Rmd @@ -50,4 +50,9 @@ ggplot( color = country )) + geom_line() -``` \ No newline at end of file +``` + + +# Plot of fertility rate and life expetency by country through time + +# Plot of GPD and child survival by country through time \ No newline at end of file diff --git a/session_1/bioconductor.Rmd b/session_1/bioconductor.Rmd new file mode 100644 index 0000000000000000000000000000000000000000..1e366f801d2300a8d1d6458dcc10cf27f151aa76 --- /dev/null +++ b/session_1/bioconductor.Rmd @@ -0,0 +1,27 @@ +--- +title: 'R.1: Installing packages from Bioconductor' +author: "Laurent Modolo [laurent.modolo@ens-lyon.fr](mailto:laurent.modolo@ens-lyon.fr)" +date: "2021" +output: + rmdformats::downcute: + self_contain: false + use_bookdown: true + default_style: "dark" + lightbox: true + css: "../src/style.css" +--- + +```{r setup, include=FALSE} +rm(list=ls()) +knitr::opts_chunk$set(echo = TRUE) +knitr::opts_chunk$set(comment = NA) +``` +```{r klippy, echo=FALSE, include=TRUE} +klippy::klippy( + position = c('top', 'right'), + color = "white", + tooltip_message = 'Click to copy', + tooltip_success = 'Copied !') +``` + +To install packages from [Bioconducor](http://www.bioconductor.org) you need to \ No newline at end of file diff --git a/session_1/github.Rmd b/session_1/github.Rmd new file mode 100644 index 0000000000000000000000000000000000000000..ce8900add8f795c66ca6eeae0abf76956604d8a4 --- /dev/null +++ b/session_1/github.Rmd @@ -0,0 +1,27 @@ +--- +title: 'R.1: Installing packages from github' +author: "Laurent Modolo [laurent.modolo@ens-lyon.fr](mailto:laurent.modolo@ens-lyon.fr)" +date: "2021" +output: + rmdformats::downcute: + self_contain: false + use_bookdown: true + default_style: "dark" + lightbox: true + css: "../src/style.css" +--- + +```{r setup, include=FALSE} +rm(list=ls()) +knitr::opts_chunk$set(echo = TRUE) +knitr::opts_chunk$set(comment = NA) +``` +```{r klippy, echo=FALSE, include=TRUE} +klippy::klippy( + position = c('top', 'right'), + color = "white", + tooltip_message = 'Click to copy', + tooltip_success = 'Copied !') +``` + +To install packages from [github](https://github.com/) you need to \ No newline at end of file