diff --git a/README.md b/README.md index f6566b098ab661583779a0b380358489f6498691..d6212e89b756e70c44b76fca49b5d5176da275e5 100644 --- a/README.md +++ b/README.md @@ -3,12 +3,12 @@ The sessions will be starting the 14/09: - **Monday 11h - 12h30** - - salle de TP du CBP: 20/09, 27/04, 04/10, 11/10, 18/10, 25/10, 08/11, 15/11 + - salle de TP du CBP: 20/09, 27/09, 04/10, 11/10, 18/10, 25/10, 08/11, 15/11 - **Tuesday 11h - 12h30** - - salle de TP du CBP: 14/09, 21/04 + - salle de TP du CBP: 14/09, 21/09 - salle de TP de l’IBCP: 12/10, 19/10, 26/10, 02/11, 09/11, 23/11 - **Friday 11h - 12h30** - - salle de TP du CBP: 17/09, 24/04, 01/10, 08/10, 15/10, 22/10, 29/10, 05/11, 12/11, 19/11 + - salle de TP du CBP: 17/09, 24/09, 01/10, 08/10, 15/10, 22/10, 29/10, 05/11, 12/11, 19/11 Groups: ## Monday diff --git a/session_1/bioconductor.Rmd b/session_1/bioconductor.Rmd index 1e366f801d2300a8d1d6458dcc10cf27f151aa76..128b7515ddc80583f2b304141c553218297f9485 100644 --- a/session_1/bioconductor.Rmd +++ b/session_1/bioconductor.Rmd @@ -24,4 +24,18 @@ klippy::klippy( tooltip_success = 'Copied !') ``` -To install packages from [Bioconducor](http://www.bioconductor.org) you need to \ No newline at end of file +To install packages from [bioconductor](http://www.bioconductor.org) you must first install a package called "BiocManager". +This package imports a function called "install" allowing you to install packages hosted in bioconductor from their name. + +To install "BiocManager" you must type: + +```R +install.packages("BiocManager") +``` + +Then to install, for example "tximport", you just have to write: + +```R +BiocManager::install("tximport") +``` + diff --git a/session_1/github.Rmd b/session_1/github.Rmd index ce8900add8f795c66ca6eeae0abf76956604d8a4..60d223bb624ecf8e575e6d6bc3ec798566e9ddf0 100644 --- a/session_1/github.Rmd +++ b/session_1/github.Rmd @@ -24,4 +24,27 @@ klippy::klippy( tooltip_success = 'Copied !') ``` -To install packages from [github](https://github.com/) you need to \ No newline at end of file +If you need to install a package that is not available on the CRAN but on a github repository, you can do it using the "remotes" package. Indeed this package imports functions that will allow you to install a package available on [github](https://github.com/) or bitbucket or gitlab directly on your computer. + +To use the "remotes" packages, you must first install it: + +```R +install.packages("remotes") +``` + +Once "remotes" is installed, you will be able to install all R package from github or from their URL. + +For example, if you want to install the last version of a "gganimate", which allow you to animate ggplot2 graphes, you can use : + +```R +remotes::install_github("thomasp85/gganimate") +``` + +By default the latest version of the package is installed, if you want a given version you can specify it : + +```R +remotes::install_github("thomasp85/gganimate@v1.0.7") +``` + +You can find more information in the documentation of remotes : [https://remotes.r-lib.org](https://remotes.r-lib.org) +