Commits · ddc4ddae567fa90a1a0d71329a9b3c300edb4b27 · aguill09 / nextflow

05 Jun, 2018 8 commits
- Merge branch 'master' into 'master' · ddc4ddae
  Laurent Modolo authored Jun 05, 2018
```
add TP_experimental_biologists.md file

See merge request pipelines/nextflow!1
```
  ddc4ddae
- add TP_experimental_biologists.md file · d1932982
  Laurent Modolo authored Jun 05, 2018
  
  d1932982
- README.md: add tests section · 8f9a3e6d
  Laurent Modolo authored Jun 05, 2018
  
  8f9a3e6d
- make tests.sh files executable · aac63da9
  Laurent Modolo authored Jun 05, 2018
  
  aac63da9
- RSEM: fix dockerfile and add nf and test files · 4d8776b9
  Laurent Modolo authored Jun 05, 2018
  
  4d8776b9
- change collect to toList in nf files and run tests with multiple fastq · f7f61d07
  Laurent Modolo authored Jun 05, 2018
  
  f7f61d07
- Kallisto: nf fix index for single-end · 5f4bd25b
  Laurent Modolo authored Jun 05, 2018
  
  5f4bd25b
- Kallisto: config fix module name · 91613eea
  Laurent Modolo authored Jun 05, 2018
  
  91613eea
04 Jun, 2018 9 commits
- Kallisto: add nf and tests files · f0d5b150
  Laurent Modolo authored Jun 04, 2018
  
  f0d5b150
- HTSeq: add nf and tests files · 072e204a
  Laurent Modolo authored Jun 04, 2018
  
  072e204a
- fix docker configuration · b0a4d2c1
  Laurent Modolo authored Jun 04, 2018
  
  b0a4d2c1
- Bowtie2: config fix module name · 018f08c7
  Laurent Modolo authored Jun 04, 2018
  
  018f08c7
- add publishDir · 5b1011f6
  Laurent Modolo authored Jun 04, 2018
  
  5b1011f6
- Bowtie2: add nf files and tests · 786e69de
  Laurent Modolo authored Jun 04, 2018
  
  786e69de
- Bowtie2: add samtools to Dockerfile · f594ce88
  Laurent Modolo authored Jun 04, 2018
  
  f594ce88
- SAMtools.config: fix container name · 2a51f02d
  Laurent Modolo authored Jun 04, 2018
  
  2a51f02d
- SAMtools: add nf and test scripts · e77f630e
  Laurent Modolo authored Jun 04, 2018
  
  e77f630e
01 Jun, 2018 4 commits
- UrQt: add tests · 051b3925
  Laurent Modolo authored Jun 01, 2018
  
  051b3925
- UrQt: add tests, nf and config · 86a16ba6
  Laurent Modolo authored Jun 01, 2018
  
  86a16ba6
- cutadapt.nf: improve description · a55eb6da
  Laurent Modolo authored Jun 01, 2018
  
  a55eb6da
- cutadapt: add tests and config · 2c488dbf
  Laurent Modolo authored Jun 01, 2018
  
  2c488dbf
31 May, 2018 13 commits
- cutadapt.config: add config file for docker · ae7f6a84
  Laurent Modolo authored May 31, 2018
  
  ae7f6a84
- cutadapt.nf: add trimming script · 9ae3505c
  Laurent Modolo authored May 31, 2018
  
  9ae3505c
- cutadapt.nf: adaptator trimming code for paired and single-ends · aafb78a0
  Laurent Modolo authored May 31, 2018
  
  aafb78a0
- CONTRIBUTING.md : add temporary guide · d2301953
  Laurent Modolo authored May 31, 2018
  
  d2301953
- README.md : add installation guide · 082ba1ec
  Laurent Modolo authored May 31, 2018
  
  082ba1ec
- UrQt/d62c1f8: add docker files · 083ce11c
  Laurent Modolo authored May 31, 2018
  
  083ce11c
- add README · aa6e9610
  Laurent Modolo authored May 31, 2018
  
  aa6e9610
- Add LICENSE · 89f0cbf7
  Laurent Modolo authored May 31, 2018
  
  89f0cbf7
- Delete LICENSE · d1ef29e6
  Laurent Modolo authored May 31, 2018
  
  d1ef29e6
- Add CHANGELOG · 906ce574
  Laurent Modolo authored May 31, 2018
  
  906ce574
- Add contribution guide · b75d7bf7
  Laurent Modolo authored May 31, 2018
  
  b75d7bf7
- RSEM/1.3.0: add docker files · 211d7cd7
  Laurent Modolo authored May 31, 2018
  
  211d7cd7
- update sge_module · 149a6531
  Laurent Modolo authored May 31, 2018
  
  149a6531
30 May, 2018 6 commits
- Salmon/0.8.2: add docker files · a2ddd33f
  Laurent Modolo authored May 30, 2018
  
  a2ddd33f
- MultiQC/1.0: add docker files · 65508b53
  Laurent Modolo authored May 30, 2018
  
  65508b53
- Trimmomatic/0.36: add docker files · deb2e053
  Laurent Modolo authored May 30, 2018
  
  deb2e053
- deepTools/3.0.2: add docker files · 950416c3
  Laurent Modolo authored May 30, 2018
  
  950416c3
- HTSeq/0.8.0: add docker files · bf9c81d8
  Laurent Modolo authored May 30, 2018
  
  bf9c81d8
- Kallisto/0.43.1: install file for docker · 7bb1e1d0
  Laurent Modolo authored May 30, 2018
  
  7bb1e1d0