# CHANGES IN HTRfit VERSION 2.0.0 * Improved Documentation: Clearer and more comprehensive information on HTRfit functionalities and usage. * Additional Metrics: Added PR curve, precision, recall, accuracy, and R2 for enhanced model evaluation. * Reduced Dependencies: Streamlined installation by removing the need for plotROC. # CHANGES IN HTRfit VERSION 1.0.2 * R files reorganization, log file enhancement and versioning * R files have been restructured to enhance clarity. * The log file location has been relocated to the R temporary directory. * A bug that was causing issues with writing the 'group' information in log files during model update has been fixed. * Fix NOTE "no visible binding for global variable" linked to ggplot2 * Fix bug with packageVersion("HTRfit") # CHANGES IN HTRfit VERSION 1.0.1 * The metrics_plot function has been updated to display histograms instead of density plots. * The identity plot's point shape has been modified, enhancing the visual clarity of comparisons between HTRfit and DESeq2 results. * Similar to the identity plot, the dispersion plot also benefits from improved point shape, contributing to a more effective visual analysis. * Add xlab/ylab to ROC plot * The vignette section now includes a new topic, "About mixed model evaluation". # CHANGES IN HTRfit VERSION 1.0.0 * End of core development, Ready for beta testing * The functions, tests, and vignettes are fully functional and operational! * To do: 1) conducting installation tests , 2) seeking out beta testers for further evaluation.