FROM rocker/r-base:4.3.1

RUN apt-get -y update  && \
    apt-get -y install cmake libxml2-dev libcurl4-gnutls-dev

COPY HTRfit_2.0.9.tar.gz  /HTRfit_2.0.9.tar.gz

RUN R -e "install.packages(c('parallel', 'data.table', 'ggplot2', 'gridExtra', 'glmmTMB', 'magrittr', 'MASS', 'reshape2', 'rlang', 'stats', 'utils', 'BiocManager', 'car'))" 

RUN R -e "BiocManager::install('S4Vectors', update = FALSE)"

RUN R -e "BiocManager::install('DESeq2', update = FALSE)" 

RUN R -e "install.packages('/HTRfit_2.0.9.tar.gz', repos = NULL, type='source')"

RUN rm -fr /HTRfit_2.0.9.tar.gz