From ddbe176b35f04982e594552e3e5dd4f4930cb0a7 Mon Sep 17 00:00:00 2001 From: aduvermy <arnaud.duvermy@ens-lyon.fr> Date: Wed, 25 Oct 2023 13:53:54 +0200 Subject: [PATCH] update readme test $` --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index ffd578c..bb839c5 100644 --- a/README.md +++ b/README.md @@ -63,7 +63,7 @@ We have developed [Docker images](https://hub.docker.com/repository/docker/ruana </div> -In this modeling framework, counts denoted as $K_{ij}$ for gene i and sample j are generated using a negative binomial distribution. The negative binomial distribution considers a fitted mean $\mu_{ij}$ and a gene-specific dispersion parameter $\alpha_i$. +In this modeling framework, counts denoted as $`K_{ij}`$ for gene i and sample j are generated using a negative binomial distribution. The negative binomial distribution considers a fitted mean $`\mu_{ij}`$ and a gene-specific dispersion parameter $`\alpha_i`$. The fitted mean $\mu_{ij}$ is determined by a parameter, qij, which is proportionally related to the sum of all effects specified using `init_variable()` or `add_interaction()`. If basal gene expressions are provided, the $\mu_{ij}$ values are scaled accordingly using the gene-specific basal expression value ($bexpr_i$). -- GitLab