From d74cd89323a910cff66a9eb96c8c43a23a2a2470 Mon Sep 17 00:00:00 2001
From: aduvermy <arnaud.duvermy@ens-lyon.fr>
Date: Tue, 24 Oct 2023 16:20:04 +0200
Subject: [PATCH] update Rd files
---
man/metrics_plot.Rd | 2 +-
man/simulationReport.Rd | 8 ++++----
2 files changed, 5 insertions(+), 5 deletions(-)
diff --git a/man/metrics_plot.Rd b/man/metrics_plot.Rd
index f252d49..f01ebf1 100644
--- a/man/metrics_plot.Rd
+++ b/man/metrics_plot.Rd
@@ -14,7 +14,7 @@ values include "AIC", "BIC", "logLik", "deviance", "df.resid", and
"dispersion". If \code{NULL}, all available metrics will be plotted.}
}
\value{
-A ggplot object displaying density plots for the specified metrics.
+A ggplot object displaying histogram plots for the specified metrics.
}
\description{
This function generates a density plot of the specified metrics for the given
diff --git a/man/simulationReport.Rd b/man/simulationReport.Rd
index 2d678f3..123a3af 100644
--- a/man/simulationReport.Rd
+++ b/man/simulationReport.Rd
@@ -7,10 +7,10 @@
simulationReport(
mock_obj,
list_tmb = NULL,
- dds_obj = NULL,
coeff_threshold = 0,
alt_hypothesis = "greaterAbs",
- report_file = NULL
+ report_file = NULL,
+ dds_obj = NULL
)
}
\arguments{
@@ -18,13 +18,13 @@ simulationReport(
\item{list_tmb}{A list of model results.}
-\item{dds_obj}{a DESeq2 object}
-
\item{coeff_threshold}{A threshold for comparing estimates.}
\item{alt_hypothesis}{The alternative hypothesis for comparisons ("greater", "less", "greaterAbs").}
\item{report_file}{File name to save the generated report. If NULL, the report will not be exported.}
+
+\item{dds_obj}{a DESeq2 object}
}
\value{
A list containing settings, plots, and evaluation results.
--
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