From c9d35418fcaddc871160d26e4e07ef6f03f63bd1 Mon Sep 17 00:00:00 2001
From: aduvermy <arnaud.duvermy@ens-lyon.fr>
Date: Wed, 25 Oct 2023 10:30:08 +0200
Subject: [PATCH] dockerfile v1.0.1
---
.dockerfile/v1.0.1/dockerfile | 12 ++++++++++++
1 file changed, 12 insertions(+)
create mode 100644 .dockerfile/v1.0.1/dockerfile
diff --git a/.dockerfile/v1.0.1/dockerfile b/.dockerfile/v1.0.1/dockerfile
new file mode 100644
index 0000000..17db2ca
--- /dev/null
+++ b/.dockerfile/v1.0.1/dockerfile
@@ -0,0 +1,12 @@
+FROM r-base:4.3.1
+
+
+RUN apt-get -y update && \
+ apt-get -y install cmake libxml2-dev libcurl4-gnutls-dev
+
+RUN wget http://gitbio.ens-lyon.fr/aduvermy/HTRfit/-/archive/v1.0.1/HTRfit-v1.0.1.tar && \
+ tar -xf /HTRfit-v1.0.1.tar && \
+ R -e "install.packages(c('car', 'parallel', 'data.table', 'ggplot2', 'gridExtra', 'glmmTMB', 'magrittr', 'MASS', 'plotROC', 'reshape2', 'rlang', 'stats', 'utils', 'BiocManager'))" && \
+ R -e "BiocManager::install('S4Vectors', update = FALSE)" && \
+ R -e "BiocManager::install('DESeq2', update = FALSE)" && \
+ R -e "install.packages('/HTRfit-v1.0.1', repos = NULL, type='source')"
--
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