From c3c1a41cfebe7da2920550fd77f531d15b5cb47c Mon Sep 17 00:00:00 2001
From: aduvermy <arnaud.duvermy@ens-lyon.fr>
Date: Fri, 5 Apr 2024 09:57:29 +0200
Subject: [PATCH] add docker v2.0.8
Former-commit-id: fcbf00994a0623aea625c3635398859de2017227
Former-commit-id: def3f17e48a5c8e3f3d87fdb63125cd43148ca0c
Former-commit-id: 33af1e6c470810abb3a0a013bbf8687cbe645a9e
---
.../v2.0.8/HTRfit_2.0.8.tar.gz.REMOVED.git-id | 1 +
.dockerfile/v2.0.8/dockerfile | 14 ++++++++++++++
2 files changed, 15 insertions(+)
create mode 100644 .dockerfile/v2.0.8/HTRfit_2.0.8.tar.gz.REMOVED.git-id
create mode 100644 .dockerfile/v2.0.8/dockerfile
diff --git a/.dockerfile/v2.0.8/HTRfit_2.0.8.tar.gz.REMOVED.git-id b/.dockerfile/v2.0.8/HTRfit_2.0.8.tar.gz.REMOVED.git-id
new file mode 100644
index 0000000..07c3587
--- /dev/null
+++ b/.dockerfile/v2.0.8/HTRfit_2.0.8.tar.gz.REMOVED.git-id
@@ -0,0 +1 @@
+8e7416983fa0e6c8a76e175751974bcdb121743a
\ No newline at end of file
diff --git a/.dockerfile/v2.0.8/dockerfile b/.dockerfile/v2.0.8/dockerfile
new file mode 100644
index 0000000..5c15ac4
--- /dev/null
+++ b/.dockerfile/v2.0.8/dockerfile
@@ -0,0 +1,14 @@
+FROM rocker/r-base:4.3.1
+
+RUN apt-get -y update && \
+ apt-get -y install cmake libxml2-dev libcurl4-gnutls-dev
+
+COPY HTRfit_2.0.8.tar.gz /HTRfit_2.0.8.tar.gz
+
+RUN R -e "install.packages(c('parallel', 'data.table', 'ggplot2', 'gridExtra', 'glmmTMB', 'magrittr', 'MASS', 'reshape2', 'rlang', 'stats', 'utils', 'BiocManager', 'car'))"
+
+RUN R -e "BiocManager::install('S4Vectors', update = FALSE)"
+
+RUN R -e "BiocManager::install('DESeq2', update = FALSE)"
+
+RUN R -e "install.packages('/HTRfit_2.0.8.tar.gz', repos = NULL, type='source')"
--
GitLab