diff --git a/vignettes/tutorial.Rmd b/vignettes/tutorial.Rmd index 593b25bda082ebeacb694eb877a2f662d313dac7..cddcec2d09fc505ff8b42c352f152d3c857ba4ed 100644 --- a/vignettes/tutorial.Rmd +++ b/vignettes/tutorial.Rmd @@ -44,8 +44,7 @@ pub_metadata <- read.table(file = pub_metadata_fn, header = TRUE) To estimate plausible parameter distributions, we will fit a generalized linear model (GLM) to the publicly available data. This GLM will allow us to estimate plausible coefficients betaG, betaE, and betaGxE for 6000 genes. The `tidy_pub_fit` object contains the estimate obtain by HTRfit for each coefficient and each genes. -```{ r fit_pub_data, eval=FALSE, message=FALSE, warning=FALSE } - +```{r fit_pub_data, eval=FALSE, message=FALSE, warning=FALSE, include=TRUE} ## -- prepare data & fit a model data2fit = prepareData2fit(countMatrix = pub_data, metadata = pub_metadata, @@ -58,7 +57,6 @@ l_tmb <- fitModelParallel(formula = kij ~ genotype + environment + genotype:envi n.cores = 1) ## -- extract results tidy_pub_fit <- tidy_results(l_tmb) - ``` ### Estimating parameter distributions