From 81a137f3e0eebe0f1c1b4fe63dc73732d3930b33 Mon Sep 17 00:00:00 2001
From: aduvermy <arnaud.duvermy@ens-lyon.fr>
Date: Thu, 18 Jan 2024 15:48:43 +0100
Subject: [PATCH] add rsconnect packge
---
.gitlab-ci.yml | 10 +++++++++-
1 file changed, 9 insertions(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index aaf1233..d3802b7 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -6,11 +6,19 @@ before_script:
- apt-get install -y --no-install-recommends libcurl4-openssl-dev libxext6 libxtst6 libxt6
- apt-get install -y --no-install-recommends qpdf pandoc pandoc-citeproc
- R -e 'install.packages(c("testthat", "rmarkdown"));'
- - R -e "install.packages(c('matrix', 'parallel', 'data.table', 'ggplot2', 'gridExtra', 'glmmTMB', 'magrittr', 'MASS', 'reshape2', 'rlang', 'stats', 'utils', 'BiocManager', 'car'))"
+ - R -e "install.packages(c('rsconnect', 'matrix', 'parallel', 'data.table', 'ggplot2', 'gridExtra', 'glmmTMB', 'magrittr', 'MASS', 'reshape2', 'rlang', 'stats', 'utils', 'BiocManager', 'car'))"
- R -e "BiocManager::install('S4Vectors', update = FALSE)"
- R -e "BiocManager::install('DESeq2', update = FALSE)"
- R -e 'install.packages(setdiff(desc::desc()$get_deps()$package, c(installed.packages(), "R")));'
+
+devtools-check:
+ stage: build
+ script:
+ - R -e 'devtools::check(error_on = "error")'
+
+
+
pages:
stage: build
script:
--
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