diff --git a/README.md b/README.md index 1c24bcfe7128bb4d8cb4a9418dfe07bed24202d9..bd470b1a095ce5594e66142d16d93457fb9717bc 100644 --- a/README.md +++ b/README.md @@ -1,4 +1,4 @@ -% Counts simulations & DESEQ2 investigations +#Counts simulations & DESEQ2 investigations Purpose: 1) Understand how DESEQ2 works @@ -6,7 +6,7 @@ Purpose: 2) Refined biological protocol (seqeuncing effort, ...) -# About DESEQ2 +## About DESEQ2 The differential expression analysis uses a generalized linear model of the form: Kij ∼ NB(µij , α i ) @@ -24,11 +24,11 @@ Experiments without replicates do not allow for estimation of the dispersion of expected value for each group, which is critical for differential expression analysis. Analysis with-out replicates is no longer supported since v1.22. -# Investigation of µ effect +## Investigation of µ effect <img src="./img/fig_mu_effect.svg"> -# Investigation of µ effect +## Investigation of alpha effect <img src="./img/fig_size_effect.svg">