mylabstocks issueshttps://gitbio.ens-lyon.fr/LBMC/yvertlab/mylabstocks/-/issues2024-02-02T13:58:10+01:00https://gitbio.ens-lyon.fr/LBMC/yvertlab/mylabstocks/-/issues/174upgrade to Laravel 102024-02-02T13:58:10+01:00Gael Yvertupgrade to Laravel 10Of course, this should be solved AFTER solving issue #163
Apparently, Voyager became compatible with Laravel 10 when version 3.7 was released, see [this discussion](https://github.com/thedevdojo/voyager/issues/5740). So we should first...Of course, this should be solved AFTER solving issue #163
Apparently, Voyager became compatible with Laravel 10 when version 3.7 was released, see [this discussion](https://github.com/thedevdojo/voyager/issues/5740). So we should first upgrade voyager before going to Laravel 10.Gael YvertGael Yverthttps://gitbio.ens-lyon.fr/LBMC/yvertlab/mylabstocks/-/issues/173Searching a field with constrained choices2023-02-09T11:33:21+01:00fduveauSearching a field with constrained choicesWhen entering new data, some of the fields are constrained by a predetermined list of choices. It would be nice to also be constrained by the same list of choices in the search tool when searching based on a constrained field.When entering new data, some of the fields are constrained by a predetermined list of choices. It would be nice to also be constrained by the same list of choices in the search tool when searching based on a constrained field.https://gitbio.ens-lyon.fr/LBMC/yvertlab/mylabstocks/-/issues/169How to export selected plasmids to a spreadsheet file?2022-12-15T17:15:01+01:00Zhiping XieHow to export selected plasmids to a spreadsheet file?Currently (v2.0.7), when exporting plasmids in the backend, all plasmids in the database are exported. Is there a way to export only plasmids selected by user, or filtered by a search term, instead of everything?Currently (v2.0.7), when exporting plasmids in the backend, all plasmids in the database are exported. Is there a way to export only plasmids selected by user, or filtered by a search term, instead of everything?v2.2https://gitbio.ens-lyon.fr/LBMC/yvertlab/mylabstocks/-/issues/168visualize the content of boxes ?2022-06-14T09:39:25+02:00Gael Yvertvisualize the content of boxes ?It would be nice to have pages that display the content of boxes. This could be done in the frontend with dedicated read views. Ideally, a matrix dipslayed with boxe's rows and columns, where each cell is clickable to display the read vi...It would be nice to have pages that display the content of boxes. This could be done in the frontend with dedicated read views. Ideally, a matrix dipslayed with boxe's rows and columns, where each cell is clickable to display the read view of the item stored at this boxposition.v2.2https://gitbio.ens-lyon.fr/LBMC/yvertlab/mylabstocks/-/issues/136establish relationships in events' BREAD2021-07-15T17:44:19+02:00Gael Yvertestablish relationships in events' BREAD- Add relationship between events and data_types.
- Add a `item_id` column that will store the id of the data_type for which the event occurred.
- Propose event types directly from DropDown menu (options). We don't need the event_types t...- Add relationship between events and data_types.
- Add a `item_id` column that will store the id of the data_type for which the event occurred.
- Propose event types directly from DropDown menu (options). We don't need the event_types table.
- Offer an upgrade procedure to re-import the data stored in pipet_events into the events table with links to pipets. Indeed, after upgrading from v1 to v2.0.1, what was in pipet_histories is now in table pipet_events. We must store this as `events` and then drop the pipet_events table.https://gitbio.ens-lyon.fr/LBMC/yvertlab/mylabstocks/-/issues/80Make BLAST output dynamic (clickable)2022-06-02T12:51:40+02:00Gael YvertMake BLAST output dynamic (clickable)Would be very nice to have the possibility to click on the items retrieved by BLAST to display them in browse and/or read mode.Would be very nice to have the possibility to click on the items retrieved by BLAST to display them in browse and/or read mode.https://gitbio.ens-lyon.fr/LBMC/yvertlab/mylabstocks/-/issues/30Migrations to species of interest2022-06-21T14:56:54+02:00Gael YvertMigrations to species of interestWe will distribute a core database with: users, oligos, plasmids... and then, for every species (eg cerevisiae, elegans, melanogaster....) a migration that can add or remove this species.We will distribute a core database with: users, oligos, plasmids... and then, for every species (eg cerevisiae, elegans, melanogaster....) a migration that can add or remove this species.https://gitbio.ens-lyon.fr/LBMC/yvertlab/mylabstocks/-/issues/25migrate auxotrophies to a table genetic_markers2022-05-23T09:48:31+02:00Gael Yvertmigrate auxotrophies to a table genetic_markersWe can store all genetic markers in a table, with columns:
- id
- name
- species_id
- gene
- allele
- comments
and then make a manyToMany relationship with the strains. Ideally, subsetting on the relevant species. This will cover auxotr...We can store all genetic markers in a table, with columns:
- id
- name
- species_id
- gene
- allele
- comments
and then make a manyToMany relationship with the strains. Ideally, subsetting on the relevant species. This will cover auxotrophies and Mating types for yeast strains. It will also include markers of other species (C. elegans etc...) in the future.
I see this as a secondary implementation (after we have imported gylab database)v2.2Gael YvertGael Yverthttps://gitbio.ens-lyon.fr/LBMC/yvertlab/mylabstocks/-/issues/23build a manyTomany relationship between plasmids and strains2022-01-31T13:58:27+01:00Gael Yvertbuild a manyTomany relationship between plasmids and strainsv2.2https://gitbio.ens-lyon.fr/LBMC/yvertlab/mylabstocks/-/issues/22build a manyTomany relationship between oligos and strains2021-12-16T10:06:37+01:00Gael Yvertbuild a manyTomany relationship between oligos and strainsv2.2https://gitbio.ens-lyon.fr/LBMC/yvertlab/mylabstocks/-/issues/21build a manyToMany relationship between oligos and plasmids2021-12-16T10:06:45+01:00Gael Yvertbuild a manyToMany relationship between oligos and plasmidsv2.2