From f3a5fec3472a836c9da1328f0f4f2b955acb63b9 Mon Sep 17 00:00:00 2001
From: Xavier Grand <xavier.grand@ens-lyon.fr>
Date: Wed, 10 Aug 2022 08:37:54 +0200
Subject: [PATCH] Modif Channel indexed genome.
---
src/RNAseq_XGR.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/RNAseq_XGR.nf b/src/RNAseq_XGR.nf
index 0d97c53..90f63aa 100644
--- a/src/RNAseq_XGR.nf
+++ b/src/RNAseq_XGR.nf
@@ -163,7 +163,7 @@ workflow {
// genome_indexed_input = ref_1.concat(ref_2,ref_3,ref_4,ref_5,ref_6,ref_7,ref_8,ref_9,ref_10,ref_11,ref_12,ref_13,ref_14,ref_15)
Channel
- .fromPath( "${params.idx}/*" )
+ .fromPath( "${params.idx}" )
.set { genome_indexed_input }
mapping_withindex(genome_indexed_input.collect(), fastp.out.fastq)
stats_bam(mapping_withindex.out.bam)
--
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