From eb8347cfd55582affd89cd74fd6aed23b83dfa2d Mon Sep 17 00:00:00 2001
From: Xavier Grand <157-xgrand@users.noreply.gitbio.ens-lyon.fr>
Date: Wed, 27 Jul 2022 09:04:44 +0200
Subject: [PATCH] RNAseq_XGR, modif idx_genome, pb with STAR, indexed genome
not found
---
src/RNAseq_XGR.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/RNAseq_XGR.nf b/src/RNAseq_XGR.nf
index 4bae42d..ab95739 100644
--- a/src/RNAseq_XGR.nf
+++ b/src/RNAseq_XGR.nf
@@ -150,7 +150,7 @@ workflow {
else {
idx_genome = "${params.idx}"
Channel
- .fromPath( idx_genome )
+ .of( idx_genome )
.set { genome_indexed_input }
mapping_withindex(genome_indexed_input.collect(), fastp.out.fastq)
htseq_count(mapping_withindex.out.bam, gtf_file)
--
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