From e590620c142d80827d29a07c240d570474e45b5f Mon Sep 17 00:00:00 2001
From: Xavier Grand <xavier.grand@ens-lyon.fr>
Date: Fri, 5 Aug 2022 11:14:37 +0200
Subject: [PATCH] Modif Channel idx_genome.
---
src/RNAseq_XGR.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/RNAseq_XGR.nf b/src/RNAseq_XGR.nf
index 0567db4..f4e4b65 100644
--- a/src/RNAseq_XGR.nf
+++ b/src/RNAseq_XGR.nf
@@ -165,7 +165,7 @@ workflow {
Channel
.fromPath( "${params.idx}/*" )
.set { genome_indexed_input }
- mapping_withindex(idx_genome, fastp.out.fastq)
+ mapping_withindex(genome_indexed_input, fastp.out.fastq)
stats_bam(mapping_withindex.out.bam)
filter_bam_mapped(mapping_withindex.out.bam)
}
--
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