diff --git a/src/RNAseq_XGR.nf b/src/RNAseq_XGR.nf index 0567db4b57c619e37cf87892b129a2c1e6718601..f4e4b65f7718e09e20fb2ce4a52b5c38423f58c8 100644 --- a/src/RNAseq_XGR.nf +++ b/src/RNAseq_XGR.nf @@ -165,7 +165,7 @@ workflow { Channel .fromPath( "${params.idx}/*" ) .set { genome_indexed_input } - mapping_withindex(idx_genome, fastp.out.fastq) + mapping_withindex(genome_indexed_input, fastp.out.fastq) stats_bam(mapping_withindex.out.bam) filter_bam_mapped(mapping_withindex.out.bam) }