diff --git a/src/quantseq.nf b/src/quantseq.nf index 34bf7a225c7fa3fd7d5caa34c3b625f4bb1f4a76..bde09071c443a80b89df17db82daf70afadd3647 100644 --- a/src/quantseq.nf +++ b/src/quantseq.nf @@ -176,7 +176,7 @@ include { fastp_default } from fastp_mod addParams(fastp_out: '02_fastp', fastp: "${params_fastp}" ) include { genome_mapping; index_fasta } from hisat2_mod addParams(folder: '06_mapping') include { sort_bam } from sammod addParams(sort_bam_out: '07_sort_bam' ) -include { stats_bam } from sammod addParams(filter_bam_quality_out: "07_bam_stats") +include { stats_bam } from sammod addParams(stats_bam_out: "07_bam_stats") include { index_bam } from sammod addParams(index_bam_out: '08_index_bam' ) include { htseq_count } from htseq_mod addParams(htseq_out: '09_htseq_count', htseq_param: "${params.htseq_param}" )