From d1acbf15aa7177a9ae9dbceffd38d76c02f9bc1f Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Mon, 7 Mar 2022 15:42:50 +0100
Subject: [PATCH] src/example_marseq.nf: update default cmd to v98 of genome
---
src/example_marseq.nf | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/src/example_marseq.nf b/src/example_marseq.nf
index 821ebd99..8e31a26b 100644
--- a/src/example_marseq.nf
+++ b/src/example_marseq.nf
@@ -16,9 +16,9 @@ include {
count_velocity_out: "quantification_velocity/"
)
-params.fasta = "http://ftp.ensembl.org/pub/release-94/fasta/gallus_gallus/dna/Gallus_gallus.Gallus_gallus-5.0.dna.toplevel.fa.gz"
+params.fasta = "http://ftp.ensembl.org/pub/release-98/fasta/gallus_gallus/dna/Gallus_gallus.GRCg6a.dna.toplevel.fa.gz"
params.fastq = "data/CF42_45/*/*R{1,2}.fastq.gz"
-params.gtf = "http://ftp.ensembl.org/pub/release-94/gtf/gallus_gallus/Gallus_gallus.Gallus_gallus-5.0.94.gtf.gz"
+params.gtf = "http://ftp.ensembl.org/pub/release-98/gtf/gallus_gallus/Gallus_gallus.GRCg6a.98.gtf.gz"
params.transcript_to_gene = ""
params.whitelist = "data/expected_whitelist.txt"
params.config = "data/marseq_flexi_splitter.yaml"
--
GitLab