diff --git a/src/example_marseq.nf b/src/example_marseq.nf index 821ebd99d45e9810b2a5fc3546e720d417666750..8e31a26b0d1b8f293880ae95c07d83dfb273511e 100644 --- a/src/example_marseq.nf +++ b/src/example_marseq.nf @@ -16,9 +16,9 @@ include { count_velocity_out: "quantification_velocity/" ) -params.fasta = "http://ftp.ensembl.org/pub/release-94/fasta/gallus_gallus/dna/Gallus_gallus.Gallus_gallus-5.0.dna.toplevel.fa.gz" +params.fasta = "http://ftp.ensembl.org/pub/release-98/fasta/gallus_gallus/dna/Gallus_gallus.GRCg6a.dna.toplevel.fa.gz" params.fastq = "data/CF42_45/*/*R{1,2}.fastq.gz" -params.gtf = "http://ftp.ensembl.org/pub/release-94/gtf/gallus_gallus/Gallus_gallus.Gallus_gallus-5.0.94.gtf.gz" +params.gtf = "http://ftp.ensembl.org/pub/release-98/gtf/gallus_gallus/Gallus_gallus.GRCg6a.98.gtf.gz" params.transcript_to_gene = "" params.whitelist = "data/expected_whitelist.txt" params.config = "data/marseq_flexi_splitter.yaml"