diff --git a/src/nf_modules/star/main_2.7.8a.nf b/src/nf_modules/star/main_2.7.8a.nf index b544b2f91bce7ccfc5a6270c768835a12b8c84e1..e7be9f7edb1b5673422089dc1c936368a2cc187e 100644 --- a/src/nf_modules/star/main_2.7.8a.nf +++ b/src/nf_modules/star/main_2.7.8a.nf @@ -211,7 +211,7 @@ if (reads_id instanceof List){ if (reads.size() == 2) """ STAR --runThreadN ${task.cpus} \ ---genomeDir $index \ +--genomeDir ${index} \ --readFilesCommand zcat \ --readFilesIn ${reads[0]} ${reads[1]} \ --outFileNamePrefix ${reads_id}. \ @@ -224,7 +224,7 @@ mv ${reads_id}.Aligned.sortedByCoord.out.bam ${reads_id}.bam else """ STAR --runThreadN ${task.cpus} \ ---genomeDir $index \ +--genomeDir ${index} \ --readFilesCommand zcat \ --readFilesIn ${reads} \ --outFileNamePrefix ${reads_id}. \