From 94b9ac07efb30437e6a147ce17fdda4824c2d08d Mon Sep 17 00:00:00 2001
From: Xavier Grand <xavier.grand@inserm.fr>
Date: Tue, 26 Sep 2023 15:22:55 +0200
Subject: [PATCH] Add pollux_singularity profile
---
src/nextflow.config | 30 ++++++++++++++++++++++++++++++
1 file changed, 30 insertions(+)
diff --git a/src/nextflow.config b/src/nextflow.config
index 482bd94..ed18089 100644
--- a/src/nextflow.config
+++ b/src/nextflow.config
@@ -235,4 +235,34 @@ profiles {
}
}
}
+ pollux_singularity {
+ singularity.enabled = true
+ singularity.cacheDir = "/opt/singularity/"
+ singularity.runOptions = "-B /home -B /data"
+ process {
+ memory = '16GB'
+ withLabel: big_mem_mono_cpus {
+ cpus = 1
+ }
+ withLabel: big_mem_multi_cpus {
+ cpus = 8
+ }
+ withLabel: small_mem_mono_cpus {
+ cpus = 1
+ memory = '2GB'
+ }
+ withLabel: small_mem_multi_cpus {
+ cpus = 8
+ memory = '2GB'
+ }
+ withLabel: mid_mem_mono_cpus {
+ cpus = 1
+ memory = '8GB'
+ }
+ withLabel: mid_mem_multi_cpus {
+ cpus = 4
+ memory = '8GB'
+ }
+ }
+ }
}
--
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