From 85e66de8ac4e3e7002aef6b6762416dc6beb3942 Mon Sep 17 00:00:00 2001
From: Xavier Grand <157-xgrand@users.noreply.gitbio.ens-lyon.fr>
Date: Mon, 25 Jul 2022 13:40:06 +0200
Subject: [PATCH] add STAR and HTseq to RNAseq_XGR.nf
---
src/RNAseq_XGR.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/RNAseq_XGR.nf b/src/RNAseq_XGR.nf
index 3295ecb..50483da 100644
--- a/src/RNAseq_XGR.nf
+++ b/src/RNAseq_XGR.nf
@@ -142,7 +142,7 @@ workflow {
.set { genome_file }
index_with_gtf(genome_file, gtf_file.collect())
- mapping_fastq(index_with_gtf.out.index, fastp.out.fastq)
+ mapping_fastq(index_with_gtf.out.index.collect(), fastp.out.fastq)
}
else {
idx_genome = "${params.idx}/*"
--
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