From 583e97473d3dc77d6e708636a175ba1df973575c Mon Sep 17 00:00:00 2001
From: Xavier Grand <157-xgrand@users.noreply.gitbio.ens-lyon.fr>
Date: Mon, 25 Jul 2022 11:34:47 +0200
Subject: [PATCH] add STAR and HTseq to RNAseq_XGR.nf
---
src/RNAseq_XGR.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/RNAseq_XGR.nf b/src/RNAseq_XGR.nf
index ef6af65..cc2ecc8 100644
--- a/src/RNAseq_XGR.nf
+++ b/src/RNAseq_XGR.nf
@@ -136,7 +136,7 @@ workflow {
if (params.idx == "") {
Channel
.fromPath( params.fasta )
- .ifEmpty { error "Cannot find any files matching: ${params.genome}" }
+ .ifEmpty { error "Cannot find any files matching: ${params.fasta}" }
.map{it -> [(it.baseName =~ /([^\.]*)/)[0][1], it]}
.set { genome_file }
--
GitLab