From 543497c6d9bc3cb637348cc3d7b891f500c00c80 Mon Sep 17 00:00:00 2001
From: Xavier Grand <157-xgrand@users.noreply.gitbio.ens-lyon.fr>
Date: Thu, 28 Jul 2022 10:15:04 +0200
Subject: [PATCH] RNAseq_XGR test with Tiny dataset
---
src/RNAseq_XGR.nf | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/src/RNAseq_XGR.nf b/src/RNAseq_XGR.nf
index 190e1bb..87be259 100644
--- a/src/RNAseq_XGR.nf
+++ b/src/RNAseq_XGR.nf
@@ -59,7 +59,7 @@ if (params.help || params.h) {
*/
/* Arguments */
-params.fastq = "$params.project/*.fastq*"
+params.fastq = "$params.project/*{1,2}.fastq*"
params.gtf = ""
params.fasta = ""
params.idx = ""
@@ -88,7 +88,6 @@ log.info "Genome index location: ${params.idx}"
Channel
.fromFilePairs( params.fastq, size: -1 )
.set { fastq_files }
- .view()
Channel
.fromPath( params.gtf )
--
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