diff --git a/src/RNAseq_XGR.nf b/src/RNAseq_XGR.nf index 190e1bb2e66a76e5410716303f17114f1e12850c..87be259d315c3507420ef001e4e68531f8434097 100644 --- a/src/RNAseq_XGR.nf +++ b/src/RNAseq_XGR.nf @@ -59,7 +59,7 @@ if (params.help || params.h) { */ /* Arguments */ -params.fastq = "$params.project/*.fastq*" +params.fastq = "$params.project/*{1,2}.fastq*" params.gtf = "" params.fasta = "" params.idx = "" @@ -88,7 +88,6 @@ log.info "Genome index location: ${params.idx}" Channel .fromFilePairs( params.fastq, size: -1 ) .set { fastq_files } - .view() Channel .fromPath( params.gtf )