diff --git a/src/RNAseq_XGR.nf b/src/RNAseq_XGR.nf index 3fc32da89312be75d5b3ce681abf0e13b0bb0740..0a1cdb63c99aeba9efb4329fa61d045104bd7884 100644 --- a/src/RNAseq_XGR.nf +++ b/src/RNAseq_XGR.nf @@ -105,8 +105,8 @@ include { fastqc_fastq as fastqc_raw } from fastqc_mod addParams(fastqc_fastq_ou include { fastqc_fastq as fastqc_preprocessed } from fastqc_mod addParams(fastqc_fastq_out: "$params.project/02_fastqc_preprocessed/") include { multiqc } from './nf_modules/multiqc/main.nf' addParams(multiqc_out: "$params.project/QC/") include { fastp } from "./nf_modules/fastp/main.nf" -include { index_with_gtf } from "./nf_modules/star/main.nf" -include { mapping_fastq } from "./nf_modules/star/main.nf" +include { index_with_gtf } from "./nf_modules/star/main_2.7.8a.nf" +include { mapping_fastq } from "./nf_modules/star/main_2.7.8a.nf" include { htseq_count } from "./nf_modules/htseq/main.nf" /* @@ -148,7 +148,7 @@ workflow { mapping_fastq(index_with_gtf.out.index, fastq_files) } else { - idx_genome = "${params.idx}/" + idx_genome = "${params.idx}/*" Channel .fromPath( idx_genome ) .ifEmpty { error "Cannot find idexed genome reference files" }