diff --git a/src/db_utils/fill_exon_n_gene_table.py b/src/db_utils/fill_exon_n_gene_table.py index d8d0fb879838fe84bf4385a89af59622266cbd3b..3add88d7afe774d85f0c675b512f6dd39c08b66b 100755 --- a/src/db_utils/fill_exon_n_gene_table.py +++ b/src/db_utils/fill_exon_n_gene_table.py @@ -21,8 +21,9 @@ def get_genomic_region(bed_file: Path) -> pd.DataFrame: :param bed_file: A bed file containing intern exons :return: the bed file as a dataframe """ - df = pd.read_csv(bed_file, sep="\t") - df.columns = ["chromosome", "start", "stop", "id", "score", "strand"] + df = pd.read_csv(bed_file, sep="\t", + names=["chromosome", "start", "stop", "id", + "score", "strand"]) df = df.loc[(df.stop - df.start > 2), :] return df