From c4545f21c3913cf6e591df637c3dadf6607b056c Mon Sep 17 00:00:00 2001 From: Fontrodona Nicolas <nicolas.fontrodona@ens-lyon.fr> Date: Thu, 5 Mar 2020 16:53:12 +0100 Subject: [PATCH] src/db_utils/frequency_scripts/create_n_fill_exon_frequency_file.py: fix fill_frequency_tables by creating theresults/frequencies directory it it doesn't exist --- .../frequency_scripts/create_n_fill_exon_frequency_file.py | 1 + 1 file changed, 1 insertion(+) diff --git a/src/db_utils/frequency_scripts/create_n_fill_exon_frequency_file.py b/src/db_utils/frequency_scripts/create_n_fill_exon_frequency_file.py index 14173c24..c3b87aa5 100644 --- a/src/db_utils/frequency_scripts/create_n_fill_exon_frequency_file.py +++ b/src/db_utils/frequency_scripts/create_n_fill_exon_frequency_file.py @@ -179,6 +179,7 @@ def fill_frequency_tables(ps: int = 1, logging_level: str = 'DISABLE'): :param ps: the number of process to create :param logging_level: The level of information to display """ + Config_freq.output.mkdir(parents=True, exist_ok=True) logging_def(Config_freq.output, __file__, logging_level) df_exon, df_gene = create_or_load_freq_table(ps) df_exon.to_csv(Config_freq.output_exon_file, sep="\t", index=False) -- GitLab