From c17457e623afe00814b541f19dbede5fcbc399aa Mon Sep 17 00:00:00 2001
From: alapendr <audrey.lapendry@ens-lyon.fr>
Date: Thu, 17 Sep 2020 14:24:16 +0200
Subject: [PATCH] db_utils/db_creation.py: modifications to add the distance
information in the tables cin_gene_interaction and cin_exon_interaction
---
src/db_utils/db_creation.py | 2 ++
1 file changed, 2 insertions(+)
diff --git a/src/db_utils/db_creation.py b/src/db_utils/db_creation.py
index ccfed76e..07900827 100755
--- a/src/db_utils/db_creation.py
+++ b/src/db_utils/db_creation.py
@@ -124,6 +124,7 @@ def create_cin_exon_interaction_table(conn: sqlite3.Connection) -> None:
[exon2] VARCHAR(30) NOT NULL,
[id_project] INT NOT NULL,
[level] VARCHAR(25) NOT NULL,
+ [distance] VARCHAR(30),
PRIMARY KEY ([id]),
FOREIGN KEY ([exon1]) REFERENCES cin_exon([id]),
FOREIGN KEY ([exon2]) REFERENCES cin_exon([id]),
@@ -146,6 +147,7 @@ def create_cin_gene_interaction_table(conn: sqlite3.Connection) -> None:
[gene2] INT NOT NULL,
[id_project] INT NOT NULL,
[level] VARCHAR(25) NOT NULL,
+ [distance] VARCHAR(30),
PRIMARY KEY ([id]),
FOREIGN KEY ([gene1]) REFERENCES cin_gene([id]),
FOREIGN KEY ([gene2]) REFERENCES cin_gene([id]),
--
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