From b3e0d1a05828cedb6257bf28b9d832dc2b2b20be Mon Sep 17 00:00:00 2001
From: Fontrodona Nicolas <nicolas.fontrodona@ens-lyon.fr>
Date: Thu, 21 Jan 2021 13:45:43 +0100
Subject: [PATCH]
src/find_interaction_cluster/community_figures/fig_functions.py: change in
lm_maker_summary function to avoid creation of a temp file
---
src/find_interaction_cluster/community_figures/fig_functions.py | 1 -
1 file changed, 1 deletion(-)
diff --git a/src/find_interaction_cluster/community_figures/fig_functions.py b/src/find_interaction_cluster/community_figures/fig_functions.py
index f01be4c8..ca586c08 100644
--- a/src/find_interaction_cluster/community_figures/fig_functions.py
+++ b/src/find_interaction_cluster/community_figures/fig_functions.py
@@ -102,7 +102,6 @@ def lm_maker_summary(df: pd.DataFrame, outfile: Path, target_col: str,
folder = outfile.parent / "diagnostics"
folder.mkdir(parents=True, exist_ok=True)
partial_name = outfile.name.replace('.pdf', '')
- df.to_csv(f'frequency_{target_col}.txt', sep="\t", index=False)
res_df = lmf(df, str(folder), partial_name).reset_index()
res_df.rename({'index': 'community'}, inplace=True, axis=1)
res_df['community'] = res_df['community'].str.replace('community', '')
--
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