From af2c94ab1931fa30685418b4ec4ea5911d67bfda Mon Sep 17 00:00:00 2001
From: Fontrodona Nicolas <nicolas.fontrodona@ens-lyon.fr>
Date: Tue, 12 Jan 2021 15:03:14 +0100
Subject: [PATCH] src/find_interaction_cluster/__main__.py: docstrig and
lazyparser changes for test_type paramter
---
src/find_interaction_cluster/__main__.py | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/src/find_interaction_cluster/__main__.py b/src/find_interaction_cluster/__main__.py
index 37102fa6..21750ae9 100644
--- a/src/find_interaction_cluster/__main__.py
+++ b/src/find_interaction_cluster/__main__.py
@@ -22,7 +22,7 @@ from .colocalisation_n_ppi_analysis import coloc_ppi_stat_main
@lp.parse(weight=range(1, 11), global_weight=range(11),
feature=('gene', 'exon'), region=('', 'exon', 'intron', 'gene'),
- iteration="iteration > 20", test_type=('lm', 'perm'),
+ iteration="iteration > 20", test_type=('lm', 'permutation'),
component_type=("nt", "aa", "dnt"))
def launcher(weight: int = 1,
global_weight: int = 0,
@@ -55,7 +55,7 @@ def launcher(weight: int = 1,
:param project: The project name of interest \
(only used is global_weight = 0).
:param test_type: The king of test to perform for frequency analysis. \
- (default 'lmm') (choose from 'lmm', 'perm')
+ (default 'lm') (choose from 'lm', 'permutation')
:param ps: The number of processes to use
"""
logging_def(ConfigGraph.community_folder, __file__, logging_level)
--
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