diff --git a/src/find_interaction_cluster/__main__.py b/src/find_interaction_cluster/__main__.py index 37102fa6918cacba2c6e068d85b068acc3e4c4c9..21750ae994f3bd33705c9865f70e78fd28d55729 100644 --- a/src/find_interaction_cluster/__main__.py +++ b/src/find_interaction_cluster/__main__.py @@ -22,7 +22,7 @@ from .colocalisation_n_ppi_analysis import coloc_ppi_stat_main @lp.parse(weight=range(1, 11), global_weight=range(11), feature=('gene', 'exon'), region=('', 'exon', 'intron', 'gene'), - iteration="iteration > 20", test_type=('lm', 'perm'), + iteration="iteration > 20", test_type=('lm', 'permutation'), component_type=("nt", "aa", "dnt")) def launcher(weight: int = 1, global_weight: int = 0, @@ -55,7 +55,7 @@ def launcher(weight: int = 1, :param project: The project name of interest \ (only used is global_weight = 0). :param test_type: The king of test to perform for frequency analysis. \ - (default 'lmm') (choose from 'lmm', 'perm') + (default 'lm') (choose from 'lm', 'permutation') :param ps: The number of processes to use """ logging_def(ConfigGraph.community_folder, __file__, logging_level)