From a2db146496642fcfefbe8cbdf369d515b2a188f6 Mon Sep 17 00:00:00 2001
From: Fontrodona Nicolas <nicolas.fontrodona@ens-lyon.fr>
Date: Fri, 26 Jun 2020 17:30:03 +0200
Subject: [PATCH] src/find_interaction_cluster/__main__.py: modification of
main function to use multiple_community_launcher
---
src/find_interaction_cluster/__main__.py | 13 +++++++++----
1 file changed, 9 insertions(+), 4 deletions(-)
diff --git a/src/find_interaction_cluster/__main__.py b/src/find_interaction_cluster/__main__.py
index 283fcfb3..9c126dca 100644
--- a/src/find_interaction_cluster/__main__.py
+++ b/src/find_interaction_cluster/__main__.py
@@ -7,13 +7,17 @@ Description: Launch the script dedicated to find communities
"""
-from .community_finder import community_finder
+from .community_finder import multiple_community_launcher
import lazyparser as lp
+from .config import ConfigGraph
+from typing import List
@lp.parse
-def launcher(weight: int = 1, global_weight: int = 0,
- project: str = "GSM1517081", same_gene: bool = True,
+def launcher(weight: List[int] = (1),
+ global_weight: List[int] = (0),
+ same_gene: bool = True,
+ ps: int = ConfigGraph.cpu,
logging_level: str = "DISABLE"):
"""
Script used to find communities inside exon co-localized within a project
@@ -28,7 +32,8 @@ def launcher(weight: int = 1, global_weight: int = 0,
same gene (True) or not (False) (default False)
:param logging_level: The level of data to display (default 'DISABLE')
"""
- community_finder(weight, global_weight, project, same_gene, logging_level)
+ multiple_community_launcher(ps, weight, global_weight, same_gene,
+ logging_level)
launcher()
\ No newline at end of file
--
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