diff --git a/src/find_interaction_cluster/tad_to_communities/config.py b/src/find_interaction_cluster/tad_to_communities/config.py index 2b724fed22a70aecd59ef863ec7389802749edb0..18f7a1fc0b7e26d8e9be6499587fa72fb6358334 100644 --- a/src/find_interaction_cluster/tad_to_communities/config.py +++ b/src/find_interaction_cluster/tad_to_communities/config.py @@ -9,6 +9,7 @@ Description: Variables for the tad_to_communities directory from pathlib import Path +from ..config import Config as IConfig class Config: @@ -18,7 +19,8 @@ class Config: data = Path(__file__).parents[3] / "data" results = Path(__file__).parents[3] / "results" tad = data / "figures_files" / "tad_to_communities" / "tad_annotations" - target_gene = data / "bed" / "gene.bed" + target_gene = IConfig.bed_gene + target_exon = IConfig.bed_exon intersect_tad_gene = results / "figures" / "tad_to_communities" / \ "intersect_tad_gene" tad_communities = results / "figures" / "tad_to_communities" / \