From 5f61e237049e0ec4278a41f18cbc0dd1262fa424 Mon Sep 17 00:00:00 2001
From: alapendr <audrey.lapendry@ens-lyon.fr>
Date: Wed, 11 Mar 2020 13:19:53 +0100
Subject: [PATCH] src/db_utils/fill_splicing_lore_tables.py: update opening
ase_event file
---
src/db_utils/fill_splicing_lore_tables.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/db_utils/fill_splicing_lore_tables.py b/src/db_utils/fill_splicing_lore_tables.py
index 63cadbb0..1027dc00 100644
--- a/src/db_utils/fill_splicing_lore_tables.py
+++ b/src/db_utils/fill_splicing_lore_tables.py
@@ -33,7 +33,7 @@ def load_ase_event() -> pd.DataFrame:
:return: The dataframe of splicing lore alternative splicing events
"""
logging.debug('loading cin_project_splicing_lore')
- df = pd.read_csv(Config.ase_event_file, sep="\t")
+ df = pd.read_csv(Config.ase_event_file, sep="\t", dtype={"chromosome": 'object'})
df.drop(["gene_symbol", "chromosome", "start", "stop", "exons_flanquants"],
inplace=True, axis=1)
cols = list(df.columns)
--
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