From 5caad347d66f89fb0adbe7a3a4f03dae19ddfe07 Mon Sep 17 00:00:00 2001
From: Fontrodona Nicolas <nicolas.fontrodona@ens-lyon.fr>
Date: Fri, 26 Jun 2020 17:29:13 +0200
Subject: [PATCH] src/find_interaction_cluster/config.py: add new variables
community_folder and cpu + modification of get_community_file for it to use
community_folder variable
---
src/find_interaction_cluster/config.py | 4 +++-
1 file changed, 3 insertions(+), 1 deletion(-)
diff --git a/src/find_interaction_cluster/config.py b/src/find_interaction_cluster/config.py
index dcac9bb6..e5d2f776 100644
--- a/src/find_interaction_cluster/config.py
+++ b/src/find_interaction_cluster/config.py
@@ -24,7 +24,7 @@ def get_community_file(project: str, weight: int, global_weight: int,
same gene
:return: The filename of interest
"""
- folder = ConfigGraph.output_folder
+ folder = ConfigGraph.community_folder
folder.mkdir(exist_ok=True, parents=True)
if is_fig:
ext = '.html'
@@ -40,7 +40,9 @@ class ConfigGraph:
Class containing all the variables that will be used in this submodule
"""
data = Config.data
+ cpu = Config.cpu
db_file = Config.db_file
results = Config.results
output_folder = results / 'community_of_co-localized-exons'
+ community_folder = output_folder / 'communities'
get_community_file = get_community_file
--
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